View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21326_low_40 (Length: 203)
Name: NF21326_low_40
Description: NF21326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21326_low_40 |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 49350331 - 49350174
Alignment:
| Q |
20 |
acttgtgtgttttaaccttggaggaagtattctacctatgctattccttgaaatgcctcaagattaatggtgatgttgatactggtcccttaaatgaaga |
119 |
Q |
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| T |
49350331 |
acttgtgtgttttaacattggaggaagtattctacctatgctattccttgaaatgcctcaagattaatggtgatgttgatactggtcccttaaatgaaga |
49350232 |
T |
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| Q |
120 |
agagttgtggcgtaacttcaagtccaagaaagatgcactcccttaaatttgagctgat |
177 |
Q |
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| T |
49350231 |
agagttgtggcgtaacttcaagtccaagaaagatgcactcccttaaatttgagctgat |
49350174 |
T |
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Target: scaffold0004 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 59 - 177
Target Start/End: Complemental strand, 250599 - 250480
Alignment:
| Q |
59 |
gctattccttgaaatgcctcaagattaatggtgatgttgatactggtcccttaaatgaagaagagttgtggcgtaacttcaagtccaagaaagatgcact |
158 |
Q |
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| T |
250599 |
gctattccttgaaatgcctcaagattaatggtgatgttgatactggtcccttaaatgaagaagagttgtggcgtaacttcaagtccaagaaagatgcact |
250500 |
T |
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| Q |
159 |
cccttaaa-tttgagctgat |
177 |
Q |
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| T |
250499 |
cccttaaattttgagctgat |
250480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 13457934 - 13458049
Alignment:
| Q |
48 |
attctacctatgctattccttgaaatgcctcaagattaatggtgatgttgatactggtcccttaaatgaagaagagttgtggcgtaacttcaagtccaag |
147 |
Q |
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| T |
13457934 |
attctacctatgctattccctgaaatgcatcaagattaatggtgatgctgataccggtcccttaaatgatgaagagttatggtgttacttcaagtctaag |
13458033 |
T |
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| Q |
148 |
aaagatgcactccctt |
163 |
Q |
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| T |
13458034 |
aaagatgcattccctt |
13458049 |
T |
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Target: scaffold0262 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 6907 - 6786
Alignment:
| Q |
31 |
ttaaccttggaggaagtattctacctatgctattccttgaaatgcctcaagattaatggtgatgttgatactggtcccttaaatgaagaagagttgtggc |
130 |
Q |
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| T |
6907 |
ttaaccgtggaggaagcattctatctaagttattcattgaaatgcctcaagattaatgacggtgctgatactggtcccttaaatgatgaagagttgtggt |
6808 |
T |
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| Q |
131 |
gtaacttcaagtccaagaaaga |
152 |
Q |
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| T |
6807 |
gttgcttcaagtccaagaaaga |
6786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 36663614 - 36663487
Alignment:
| Q |
31 |
ttaaccttggaggaagtattctacctatgctattccttgaaatgcctcaagattaa------tggtgatgttgatactggtcccttaaatgaagaagagt |
124 |
Q |
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|||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||| || || || |||||| |||||||||||||| ||||||| |
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| T |
36663614 |
ttaaccgtggaggaagcattctatctatgttattccttgaaatgcctcaagattaagattaatgttggtgctgataccggtcccttaaatgatgaagagt |
36663515 |
T |
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| Q |
125 |
tgtggcgtaacttcaagtccaagaaaga |
152 |
Q |
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| T |
36663514 |
tgtggcattacttcaggtccaagaaaga |
36663487 |
T |
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