View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21327_high_10 (Length: 349)

Name: NF21327_high_10
Description: NF21327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21327_high_10
NF21327_high_10
[»] chr4 (9 HSPs)
chr4 (123-320)||(26127549-26127745)
chr4 (26-118)||(26127854-26127946)
chr4 (230-303)||(25134571-25134644)
chr4 (219-271)||(39736669-39736721)
chr4 (214-304)||(25102666-25102756)
chr4 (226-268)||(51995071-51995113)
chr4 (230-303)||(40797827-40797900)
chr4 (230-303)||(50710840-50710913)
chr4 (219-268)||(56224131-56224180)
[»] chr1 (2 HSPs)
chr1 (230-303)||(40159700-40159773)
chr1 (226-268)||(50447334-50447376)
[»] chr6 (3 HSPs)
chr6 (214-268)||(2962807-2962861)
chr6 (230-303)||(13312019-13312092)
chr6 (212-256)||(8596942-8596986)
[»] chr7 (3 HSPs)
chr7 (230-303)||(26719817-26719890)
chr7 (26-56)||(22522866-22522896)
chr7 (214-303)||(18250063-18250152)
[»] chr5 (1 HSPs)
chr5 (223-303)||(36523741-36523825)
[»] chr2 (4 HSPs)
chr2 (214-268)||(12070619-12070673)
chr2 (235-268)||(2578081-2578114)
chr2 (214-303)||(11007042-11007131)
chr2 (223-268)||(37314104-37314149)
[»] chr3 (3 HSPs)
chr3 (230-303)||(40943558-40943631)
chr3 (230-303)||(54432261-54432334)
chr3 (224-268)||(20550307-20550351)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 123 - 320
Target Start/End: Complemental strand, 26127745 - 26127549
Alignment:
Q  123 attaacaacaccactacaacctgagcaatatttaaaactactcaaaaagcttattttaatattatttgtcaaataaaggtagagagaatttgagttgaat 222  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26127745 attaacgacaccactacaacctgagcaatatttaaa-ctactcaaaaagcttattttaatattatttgtcaaataaaggtagagagaattggagttgaat 26127647  T
Q  223 tatacatagttcaagtttaactcatttatttaacaaatttaatttttaagtgaatttcgagtcaattgattcatgaaccaaatttatcaaattaaaag 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  26127646 tatacatagttcaagtttaactcatttatttaacaaatttaatttttaagtgaatttcgactcaattgattcatgaaccaaattcatcaaattaaaag 26127549  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 26127946 - 26127854
Alignment:
Q  26 atcatgcaataaattcaataattcaagagatcaatgttgccaaaaatcttgaatttagatattgactcccgatctcgaagcaaaaacaatcga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  26127946 atcatgcaataaattcaataattcaagagatcaatgttgccaaaaatcttgaatctagatattgacttccgatctcgaagcaaaaacaatcga 26127854  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 25134571 - 25134644
Alignment:
Q  230 agttcaagtttaactcatttatttaacaaatttaatttttaagtgaatttcgagtcaattgattcatgaaccaa 303  Q
    |||||||||| |||||||||||||||| || |||||||| || | || ||||| ||| ||| ||||||||||||    
T  25134571 agttcaagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaaccaa 25134644  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 271
Target Start/End: Original strand, 39736669 - 39736721
Alignment:
Q  219 gaattatacatagttcaagtttaactcatttatttaacaaatttaatttttaa 271  Q
    |||| |||||||| |||| |||||||| ||||||||||||| |||||||||||    
T  39736669 gaatcatacatagctcaaatttaactcgtttatttaacaaacttaatttttaa 39736721  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 304
Target Start/End: Complemental strand, 25102756 - 25102666
Alignment:
Q  214 gagttgaattatacatagttcaagtttaactcatttatttaacaaatttaatttttaagtgaatttcgagtcaattgattcatgaaccaaa 304  Q
    ||||||||  |||| ||||| || || |||||||||||||||||| |||||| || || | |||||||  ||| ||| |||||||||||||    
T  25102756 gagttgaaccatacttagtttaaattcaactcatttatttaacaagtttaatgttcaactcaatttcggctcatttggttcatgaaccaaa 25102666  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 51995071 - 51995113
Alignment:
Q  226 acatagttcaagtttaactcatttatttaacaaatttaatttt 268  Q
    |||||||||||||| ||||| ||||||||||||| ||||||||    
T  51995071 acatagttcaagttcaactcgtttatttaacaaacttaatttt 51995113  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 40797827 - 40797900
Alignment:
Q  230 agttcaagtttaactcatttatttaacaaatttaatttttaagtgaatttcgagtcaattgattcatgaaccaa 303  Q
    |||||||||| |||||||||||||||| |  |||||||| || | || ||||| ||| ||| ||||||||||||    
T  40797827 agttcaagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaa 40797900  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 50710913 - 50710840
Alignment:
Q  230 agttcaagtttaactcatttatttaacaaatttaatttttaagtgaatttcgagtcaattgattcatgaaccaa 303  Q
    |||| ||||| |||| ||||||||||| |  |||||||| || | |||||||| ||| ||||||||||||||||    
T  50710913 agtttaagttcaacttatttatttaacgagcttaattttcaactcaatttcgactcatttgattcatgaaccaa 50710840  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 268
Target Start/End: Original strand, 56224131 - 56224180
Alignment:
Q  219 gaattatacatagttcaagtttaactcatttatttaacaaatttaatttt 268  Q
    |||||||| |||||||||||| |||| ||||| ||||| |||||||||||    
T  56224131 gaattatatatagttcaagttcaacttatttaattaacgaatttaatttt 56224180  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 40159773 - 40159700
Alignment:
Q  230 agttcaagtttaactcatttatttaacaaatttaatttttaagtgaatttcgagtcaattgattcatgaaccaa 303  Q
    |||||||||| |||||||||||||||| || |||||||| || | || ||||| ||| ||||||||||||||||    
T  40159773 agttcaagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttgattcatgaaccaa 40159700  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 50447334 - 50447376
Alignment:
Q  226 acatagttcaagtttaactcatttatttaacaaatttaatttt 268  Q
    |||||||||||||| |||||||||||||||| || ||||||||    
T  50447334 acatagttcaagttcaactcatttatttaacgaacttaatttt 50447376  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 2962861 - 2962807
Alignment:
Q  214 gagttgaattatacatagttcaagtttaactcatttatttaacaaatttaatttt 268  Q
    |||||||||||||||||||| ||||||  |||||||||||||| || ||||||||    
T  2962861 gagttgaattatacatagtttaagtttggctcatttatttaactaacttaatttt 2962807  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 13312019 - 13312092
Alignment:
Q  230 agttcaagtttaactcatttatttaacaaatttaatttttaagtgaatttcgagtcaattgattcatgaaccaa 303  Q
    |||||||||| |||||||||||||||| || |||||||| || | || ||||| ||| ||| ||||||||||||    
T  13312019 agttcaagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaaccaa 13312092  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 8596986 - 8596942
Alignment:
Q  212 ttgagttgaattatacatagttcaagtttaactcatttatttaac 256  Q
    |||||||||| |||| ||||| ||||||||||||||||| |||||    
T  8596986 ttgagttgaactatatatagtacaagtttaactcatttagttaac 8596942  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 26719817 - 26719890
Alignment:
Q  230 agttcaagtttaactcatttatttaacaaatttaatttttaagtgaatttcgagtcaattgattcatgaaccaa 303  Q
    |||||||||| |||||||||||||||| || |||||||| || | || ||||| ||| ||| ||||||||||||    
T  26719817 agttcaagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaaccaa 26719890  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 22522896 - 22522866
Alignment:
Q  26 atcatgcaataaattcaataattcaagagat 56  Q
    |||||||||||||||||||||||||||||||    
T  22522896 atcatgcaataaattcaataattcaagagat 22522866  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 18250152 - 18250063
Alignment:
Q  214 gagttgaattatacatagttcaagtttaactcatttatttaacaaatttaatttttaagtgaatttcgagtcaattgattcatgaaccaa 303  Q
    |||| |||| |||| ||||||||||| |||||||||||||||| |   ||||||| || | || ||||| ||| ||| ||||||||||||    
T  18250152 gagtcgaatcatacttagttcaagttcaactcatttatttaacgagcataattttcaactcaagttcgactcatttggttcatgaaccaa 18250063  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 36523741 - 36523825
Alignment:
Q  223 tatacatagttcaagtttaactcatttatttaacaaat----ttaatttttaagtgaatttcgagtcaattgattcatgaaccaa 303  Q
    ||||||||| ||||||| | ||||||||||||||||||    ||||||||||| | || ||||| ||| ||| ||||||||||||    
T  36523741 tatacatagctcaagttcagctcatttatttaacaaattaacttaatttttaaatcaagttcgactcatttggttcatgaaccaa 36523825  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 268
Target Start/End: Complemental strand, 12070673 - 12070619
Alignment:
Q  214 gagttgaattatacatagttcaagtttaactcatttatttaacaaatttaatttt 268  Q
    |||| ||| ||||||||||| |||||||||| |||| |||||| |||||||||||    
T  12070673 gagtcgaactatacatagtttaagtttaacttatttgtttaacgaatttaatttt 12070619  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 2578081 - 2578114
Alignment:
Q  235 aagtttaactcatttatttaacaaatttaatttt 268  Q
    |||||||||||||||||||||| |||||||||||    
T  2578081 aagtttaactcatttatttaacgaatttaatttt 2578114  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 11007131 - 11007042
Alignment:
Q  214 gagttgaattatacatagttcaagtttaactcatttatttaacaaatttaatttttaagtgaatttcgagtcaattgattcatgaaccaa 303  Q
    |||| ||||||||| || |||||||| |||||||||||||||| |  |||||||| || | || ||||| ||| ||| ||| ||||||||    
T  11007131 gagtcgaattatacttatttcaagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcgtgaaccaa 11007042  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 37314104 - 37314149
Alignment:
Q  223 tatacatagttcaagtttaactcatttatttaacaaatttaatttt 268  Q
    ||||||||| | |||||||||  |||||||||||||||||||||||    
T  37314104 tatacatagcttaagtttaacaaatttatttaacaaatttaatttt 37314149  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 40943558 - 40943631
Alignment:
Q  230 agttcaagtttaactcatttatttaacaaatttaatttttaagtgaatttcgagtcaattgattcatgaaccaa 303  Q
    |||||||||| |||||||||||||||| |  |||||||| || | || ||||| ||| ||| ||||||||||||    
T  40943558 agttcaagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaa 40943631  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 54432334 - 54432261
Alignment:
Q  230 agttcaagtttaactcatttatttaacaaatttaatttttaagtgaatttcgagtcaattgattcatgaaccaa 303  Q
    |||||||||| |||||||||||||||| |  ||||||||||| | || ||||| ||| ||  ||||||||||||    
T  54432334 agttcaagttcaactcatttatttaacgagcttaatttttaactcaagttcgactcatttagttcatgaaccaa 54432261  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 268
Target Start/End: Complemental strand, 20550351 - 20550307
Alignment:
Q  224 atacatagttcaagtttaactcatttatttaacaaatttaatttt 268  Q
    |||| ||||||||||  |||||||||||||||| |||||||||||    
T  20550351 atacttagttcaagtacaactcatttatttaacgaatttaatttt 20550307  T

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