View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21327_high_14 (Length: 327)
Name: NF21327_high_14
Description: NF21327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21327_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 44171261 - 44171553
Alignment:
| Q |
15 |
gggtgctttataattgcttctacttgctactgtcagcaagagtagaatgccaaaatctgtatatcactaaatgctgtgaaaagtgttcaatttcacttca |
114 |
Q |
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| T |
44171261 |
gggtgctttataattgcttctacttgctactgtcagcaagagtagaatgccaaaatctgtatatcactaaatgctgtgaaaagtgtgcaacttcacttca |
44171360 |
T |
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| Q |
115 |
ttaattgatcacacaggcaaactgctactatcaccacttc--nnnnnnnnnnnnnnncactaaatcacaatcagtatctaggctttcacaggtttatatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44171361 |
ttaattgatcacacaggcaaactgctactatcaccacttcaaaaaaaaaaaaaaaaacactaaatcacaatcagtatctaggctttcacaggtttatatt |
44171460 |
T |
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| Q |
213 |
atatcgttattaaagctgctctatcaaatttcatgcannnnnnngcatcaatgaccatattgagcctgttaatgagtgtgtaaaactgatgat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44171461 |
atatcgttattaaagctgctctatcaaatttcatgcatttttttgcatcaatgatcatattgagcctgttaatgagtgtgtaaaactgatgat |
44171553 |
T |
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