View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21327_high_4 (Length: 448)

Name: NF21327_high_4
Description: NF21327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21327_high_4
NF21327_high_4
[»] chr7 (23 HSPs)
chr7 (93-441)||(17503936-17504284)
chr7 (93-441)||(17548930-17549278)
chr7 (92-334)||(45164935-45165177)
chr7 (132-330)||(19544818-19545016)
chr7 (197-357)||(27218603-27218763)
chr7 (198-333)||(17056052-17056187)
chr7 (92-334)||(6335780-6336022)
chr7 (245-333)||(22819246-22819334)
chr7 (254-357)||(4937666-4937769)
chr7 (92-303)||(29557763-29557974)
chr7 (245-317)||(25018847-25018919)
chr7 (243-330)||(34104003-34104090)
chr7 (254-317)||(39931134-39931197)
chr7 (245-357)||(20349463-20349574)
chr7 (197-357)||(31423101-31423261)
chr7 (254-357)||(234976-235079)
chr7 (254-357)||(17721134-17721237)
chr7 (254-357)||(47877482-47877584)
chr7 (245-293)||(8752925-8752973)
chr7 (221-293)||(23054476-23054548)
chr7 (243-286)||(41805285-41805328)
chr7 (283-325)||(33795924-33795966)
chr7 (222-327)||(15124338-15124443)
[»] chr6 (26 HSPs)
chr6 (92-441)||(7956048-7956396)
chr6 (94-434)||(18588771-18589111)
chr6 (197-352)||(32186187-32186342)
chr6 (201-357)||(19350443-19350599)
chr6 (92-333)||(12673493-12673735)
chr6 (257-317)||(10362672-10362732)
chr6 (197-352)||(14843618-14843773)
chr6 (92-317)||(502908-503133)
chr6 (269-333)||(29056042-29056106)
chr6 (201-296)||(29976493-29976588)
chr6 (188-334)||(15602846-15602992)
chr6 (245-357)||(26514223-26514335)
chr6 (197-293)||(34434823-34434919)
chr6 (148-333)||(11060294-11060479)
chr6 (197-357)||(17605815-17605975)
chr6 (254-357)||(2554105-2554208)
chr6 (284-351)||(13086044-13086111)
chr6 (207-293)||(10919955-10920041)
chr6 (245-323)||(25350755-25350833)
chr6 (27-76)||(12673430-12673479)
chr6 (221-281)||(34180499-34180559)
chr6 (197-339)||(1104428-1104570)
chr6 (265-331)||(10922078-10922144)
chr6 (197-331)||(17577199-17577333)
chr6 (283-333)||(23065613-23065663)
chr6 (209-317)||(19256179-19256287)
[»] chr4 (25 HSPs)
chr4 (34-359)||(7098979-7099302)
chr4 (93-334)||(40688588-40688829)
chr4 (92-334)||(19162553-19162795)
chr4 (221-352)||(29553245-29553376)
chr4 (225-333)||(9777893-9778001)
chr4 (197-357)||(9690921-9691081)
chr4 (254-357)||(23642129-23642232)
chr4 (254-357)||(23647787-23647890)
chr4 (254-357)||(47419303-47419406)
chr4 (92-317)||(8935613-8935838)
chr4 (272-333)||(48805501-48805562)
chr4 (221-317)||(2365545-2365641)
chr4 (185-296)||(38296266-38296377)
chr4 (203-357)||(2072039-2072193)
chr4 (188-326)||(54685140-54685278)
chr4 (209-331)||(55725199-55725321)
chr4 (260-316)||(36183077-36183133)
chr4 (155-231)||(53100416-53100492)
chr4 (254-357)||(5789630-5789733)
chr4 (254-357)||(19755766-19755869)
chr4 (254-357)||(19783937-19784040)
chr4 (257-311)||(52617406-52617460)
chr4 (254-331)||(48312619-48312696)
chr4 (145-250)||(7662737-7662842)
chr4 (257-325)||(29328318-29328387)
[»] chr2 (14 HSPs)
chr2 (93-441)||(44028597-44028940)
chr2 (103-376)||(13416148-13416424)
chr2 (185-314)||(26146757-26146886)
chr2 (245-317)||(43310798-43310870)
chr2 (144-347)||(2207250-2207453)
chr2 (209-325)||(37445624-37445740)
chr2 (209-331)||(14440269-14440391)
chr2 (185-317)||(10689094-10689225)
chr2 (281-331)||(6727343-6727393)
chr2 (257-351)||(6823916-6824010)
chr2 (284-353)||(22725007-22725076)
chr2 (27-75)||(44028524-44028572)
chr2 (91-128)||(6787748-6787785)
chr2 (158-255)||(11028471-11028568)
[»] chr3 (30 HSPs)
chr3 (137-345)||(31675442-31675650)
chr3 (137-310)||(31920772-31920945)
chr3 (185-317)||(52250594-52250725)
chr3 (137-351)||(55367115-55367328)
chr3 (204-333)||(19875766-19875895)
chr3 (203-331)||(18381584-18381711)
chr3 (257-325)||(48930257-48930325)
chr3 (198-333)||(44888427-44888562)
chr3 (209-317)||(6825361-6825469)
chr3 (254-357)||(2364776-2364879)
chr3 (209-356)||(25024337-25024484)
chr3 (221-339)||(5342717-5342835)
chr3 (281-335)||(8130472-8130526)
chr3 (197-357)||(12341736-12341896)
chr3 (254-333)||(31547894-31547974)
chr3 (206-281)||(9510327-9510402)
chr3 (206-281)||(9518302-9518377)
chr3 (254-357)||(10323109-10323212)
chr3 (254-357)||(19919767-19919870)
chr3 (222-345)||(22734229-22734352)
chr3 (254-357)||(53941802-53941905)
chr3 (146-255)||(23819165-23819274)
chr3 (209-352)||(19891181-19891324)
chr3 (254-357)||(34332353-34332456)
chr3 (140-311)||(40513148-40513319)
chr3 (257-316)||(46190032-46190091)
chr3 (145-250)||(30166773-30166878)
chr3 (29-69)||(11757816-11757856)
chr3 (185-225)||(14091671-14091711)
chr3 (209-357)||(48569532-48569680)
[»] chr5 (27 HSPs)
chr5 (94-376)||(36256255-36256538)
chr5 (232-354)||(42039221-42039343)
chr5 (197-345)||(476724-476872)
chr5 (197-354)||(42259782-42259939)
chr5 (254-357)||(35983329-35983432)
chr5 (254-357)||(42514219-42514322)
chr5 (269-334)||(27325286-27325351)
chr5 (197-357)||(8299663-8299823)
chr5 (245-317)||(41590635-41590707)
chr5 (209-330)||(380427-380548)
chr5 (245-317)||(4297838-4297910)
chr5 (291-357)||(25856999-25857065)
chr5 (148-353)||(20208152-20208356)
chr5 (260-357)||(30731858-30731955)
chr5 (269-357)||(12825698-12825786)
chr5 (269-333)||(26262984-26263048)
chr5 (254-357)||(27116711-27116814)
chr5 (254-357)||(28535213-28535316)
chr5 (254-357)||(31642010-31642113)
chr5 (194-296)||(18896109-18896211)
chr5 (27-69)||(22174305-22174347)
chr5 (222-333)||(6049744-6049855)
chr5 (148-255)||(7000219-7000326)
chr5 (209-352)||(27795988-27796131)
chr5 (197-326)||(42928661-42928790)
chr5 (27-71)||(1821254-1821298)
chr5 (266-330)||(22176376-22176440)
[»] chr8 (25 HSPs)
chr8 (137-316)||(12341107-12341286)
chr8 (253-357)||(42649718-42649822)
chr8 (194-293)||(12332411-12332510)
chr8 (185-334)||(4310311-4310460)
chr8 (197-357)||(20824798-20824958)
chr8 (209-317)||(36492920-36493028)
chr8 (92-250)||(7452958-7453116)
chr8 (194-352)||(29721388-29721546)
chr8 (209-311)||(36025066-36025168)
chr8 (254-352)||(7924890-7924988)
chr8 (206-316)||(37165611-37165721)
chr8 (197-334)||(18187668-18187805)
chr8 (185-333)||(17659354-17659502)
chr8 (245-357)||(25193587-25193699)
chr8 (254-357)||(172577-172680)
chr8 (254-357)||(8300302-8300405)
chr8 (146-353)||(36157657-36157863)
chr8 (209-357)||(13878980-13879128)
chr8 (222-345)||(5585200-5585323)
chr8 (254-357)||(9923100-9923203)
chr8 (269-331)||(38046883-38046945)
chr8 (254-352)||(41664906-41665004)
chr8 (209-285)||(8902398-8902474)
chr8 (285-333)||(12134850-12134898)
chr8 (269-333)||(28992782-28992846)
[»] chr1 (20 HSPs)
chr1 (197-352)||(3544582-3544737)
chr1 (203-354)||(19014471-19014621)
chr1 (198-333)||(22191264-22191399)
chr1 (137-354)||(1248007-1248223)
chr1 (201-311)||(28358435-28358545)
chr1 (257-314)||(45270783-45270840)
chr1 (245-333)||(3074268-3074356)
chr1 (254-357)||(6051102-6051205)
chr1 (224-333)||(21405360-21405469)
chr1 (92-353)||(25504370-25504631)
chr1 (155-231)||(50817391-50817467)
chr1 (146-333)||(28097396-28097582)
chr1 (209-316)||(38070372-38070479)
chr1 (254-352)||(47622615-47622713)
chr1 (198-250)||(43943960-43944012)
chr1 (291-357)||(35541548-35541614)
chr1 (269-357)||(5809080-5809168)
chr1 (197-325)||(13867314-13867442)
chr1 (283-351)||(39430782-39430850)
chr1 (245-293)||(52692034-52692082)
[»] scaffold0024 (1 HSPs)
scaffold0024 (245-357)||(86730-86842)
[»] scaffold0043 (1 HSPs)
scaffold0043 (197-352)||(34090-34245)
[»] scaffold0034 (1 HSPs)
scaffold0034 (254-357)||(105381-105484)
[»] scaffold0061 (1 HSPs)
scaffold0061 (245-311)||(55207-55273)
[»] scaffold0017 (1 HSPs)
scaffold0017 (245-311)||(143361-143427)
[»] scaffold0016 (1 HSPs)
scaffold0016 (185-293)||(28337-28445)
[»] scaffold0048 (1 HSPs)
scaffold0048 (243-293)||(63826-63876)
[»] scaffold0189 (1 HSPs)
scaffold0189 (260-311)||(6633-6684)
[»] scaffold0002 (1 HSPs)
scaffold0002 (144-250)||(327563-327669)
[»] scaffold1809 (1 HSPs)
scaffold1809 (27-76)||(1111-1160)
[»] scaffold0418 (1 HSPs)
scaffold0418 (145-250)||(8210-8315)
[»] scaffold0533 (1 HSPs)
scaffold0533 (197-233)||(567-603)
[»] scaffold0026 (1 HSPs)
scaffold0026 (269-317)||(67619-67667)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 93 - 441
Target Start/End: Original strand, 17503936 - 17504284
Alignment:
Q  93 gtgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatga 192  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  17503936 gtgaggatcatagaaaaatatcttgggtgggttggaggactatctgtttacgaaaggagtatggtggtttaggcgttagacagttgaatgtttttaatta 17504035  T
Q  193 ggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttg 292  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17504036 ggcgttgttaggtaagtggtgttggcatatgttagttgatagagatggtctttggtatcgagtgttggtggcgagatacggtgaggaggatgggaggttg 17504135  T
Q  293 gaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagggggcggtgttggttggtttaatgagggtgtggtgc 392  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |    
T  17504136 gaggatgggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagggggcggtgttggttggtttaatgagtgtgtggcac 17504235  T
Q  393 gtcgtgtgggggatggggagtcttctcttttttggcatgatctgtggtg 441  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  17504236 gtcgtgtgggggatggggagtctactcttttttggcatgatcggtggtg 17504284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 93 - 441
Target Start/End: Complemental strand, 17549278 - 17548930
Alignment:
Q  93 gtgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatga 192  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  17549278 gtgaggatcatagaaaaatatcttgggtgggttggaggactatctgtttacgaaaggagtatggtggtttaggcgttagacagttgaatgtttttaatta 17549179  T
Q  193 ggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttg 292  Q
    ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17549178 ggcgttgttaggtaagtggtgttggcatatgttagttgatagagatggtctttggtatcgagtgttggtggcgagatacggtgaggaggatgggaggttg 17549079  T
Q  293 gaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagggggcggtgttggttggtttaatgagggtgtggtgc 392  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |    
T  17549078 gaggatgggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagggggcggtgttggttggtttaatgagtgtgtggcac 17548979  T
Q  393 gtcgtgtgggggatggggagtcttctcttttttggcatgatctgtggtg 441  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  17548978 gtcgtgtgggggatggggagtctactcttttttggcatgatcggtggtg 17548930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 92 - 334
Target Start/End: Original strand, 45164935 - 45165177
Alignment:
Q  92 agtgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatg 191  Q
    ||||||||||||||||||||||||||||||| ||||  ||   | ||| |  |||||||||||||||||||||| ||||| | |||||  |  |||||||    
T  45164935 agtgaggatcatagaaaaatatcttgggtgggttggcagagagtttgtatgagaaaggagtatggtggtttaggagttaggcggttgagggagtttaatg 45165034  T
Q  192 aggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggtt 291  Q
    |||||||||| || |||||||||||| |  |  | |||||| | || ||  | |||||| | |||||||| || ||||||||||    ||||||||||||    
T  45165035 aggcgttgttagggaagtggtgttggagattacttgttgatcgtggagggttgtggtatggggtgttggttgctagatatggtgttagggatgggaggtt 45165134  T
Q  292 ggaggataggggccggagtggttctttgtggtggaaggaggtt 334  Q
    ||||||| | ||||||||||||||||| |||||||||||||||    
T  45165135 ggaggatggaggccggagtggttctttttggtggaaggaggtt 45165177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 132 - 330
Target Start/End: Original strand, 19544818 - 19545016
Alignment:
Q  132 ctatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttga 231  Q
    |||| |||||||| ||||||||||| || |||||||| || |||||||  |  ||||||   || || || || || ||||||||||| ||||| || ||    
T  19544818 ctatttgtttacgtaaggagtatggagggttaggggtcaggcagttgagggagtttaatagtgccttattaggcaaatggtgttggcggatgttggtgga 19544917  T
Q  232 tagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaagga 330  Q
    ||||| |||  |||||||| | ||||||| | |  |||||||||||||||  | ||||||||||| | |||||||||||||||||||||||||||||||    
T  19544918 tagagatgggttttggtatagggtgttggcgacacgatatggtgaggaggcagagaggttggaggttgggggccggagtggttctttgtggtggaagga 19545016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 27218603 - 27218763
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    ||||| ||||| |||||||||||  ||||  | |||||||||||  |||||||| | ||||||||||||||||||||||||||||  |||||||||| ||    
T  27218603 ttgttaggtaaatggtgttggcggttgttgatagatagaggtggattttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggcgg 27218702  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
     | ||||||||||||  || |  ||||||||||||||   ||||||||| ||||| |||||    
T  27218703 ttgggggccggagtgtatcatcttggtggaaggaggtagcgaagattagggatggagtagg 27218763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 198 - 333
Target Start/End: Complemental strand, 17056187 - 17056052
Alignment:
Q  198 tgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagga 297  Q
    |||| ||||| ||||||||| |  | ||||||||||  ||| || | |||||| | |||||||||||| | ||||||||||||||||||||||||| ||     
T  17056187 tgttaggtaaatggtgttggaggttattagttgataagggtagtatgtggtatagggtgttggtggcgcgttatggtgaggaggatgggaggttggtggt 17056088  T
Q  298 taggggccggagtggttctttgtggtggaaggaggt 333  Q
    | |||||||||||| ||||| |||||||||||||||    
T  17056087 tgggggccggagtgtttcttcgtggtggaaggaggt 17056052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 334
Target Start/End: Original strand, 6335780 - 6336022
Alignment:
Q  92 agtgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatg 191  Q
    |||||||| ||||| ||||| |||||||| | ||||||| || | |||||   ||||||||| || || ||||| ||||| ||||||   |  || ||||    
T  6335780 agtgaggaacataggaaaatttcttgggtaggttggaggtctgtttgtttgaaaaaggagtacggggggttaggagttaggcagttgcgggagttcaatg 6335879  T
Q  192 aggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggtt 291  Q
    |||| ||||||||||| ||||||||  |  | ||||| |||||||| ||  | |||||||| |||||||| || || ||||||| |   |||||||||||    
T  6335880 aggcattgttgggtaaatggtgttgaagattattagtagatagaggagggttatggtatcgggtgttggttgctaggtatggtgtgcgcgatgggaggtt 6335979  T
Q  292 ggaggataggggccggagtggttctttgtggtggaaggaggtt 334  Q
    ||||||| |||||| |||||||||| | ||||||| |||||||    
T  6335980 ggaggatgggggccagagtggttctatttggtggacggaggtt 6336022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 333
Target Start/End: Original strand, 22819246 - 22819334
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggt 333  Q
    |||||| | |||||||| ||| | ||||||||||||||  ||||||||| || | |||||||||||| |||||||||||||||||||||    
T  22819246 tggtatagggtgttggtagcgcgttatggtgaggaggacaggaggttggcggttgggggccggagtgtttctttgtggtggaaggaggt 22819334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 4937666 - 4937769
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| |||||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| || ||| |||||||||||||     
T  4937666 gtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgaggattagagatggga 4937765  T
Q  354 tagg 357  Q
    ||||    
T  4937766 tagg 4937769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 92 - 303
Target Start/End: Complemental strand, 29557974 - 29557763
Alignment:
Q  92 agtgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatg 191  Q
    |||||||||||||| ||||| |||||||| || |||||| || | ||| |  | || ||||||||||| || |||||||| || ||||  |  ||||| |    
T  29557974 agtgaggatcataggaaaatctcttgggtagaatggaggtctgtttgtatgaggaacgagtatggtgggtttggggttaggcaattgagggaatttaacg 29557875  T
Q  192 aggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggtt 291  Q
    ||||||||||||| |||||||| ||| |  | ||||| ||||| || ||| |  ||||  ||||| |||| || |||||||||||||||||  |||||||    
T  29557874 aggcgttgttgggaaagtggtgatggagacttttagtggatagtgggggtttgcggtaaagagtgatggtagctagatatggtgaggaggacaggaggtt 29557775  T
Q  292 ggaggatagggg 303  Q
     |||||| ||||    
T  29557774 agaggatggggg 29557763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 25018847 - 25018919
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctt 317  Q
    |||||| | ||||||||||| |||||||||||||||| |||||||||||||| | |||| || ||||||||||    
T  25018847 tggtatagggtgttggtggcaagatatggtgaggaggctgggaggttggaggttgggggtcgaagtggttctt 25018919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 330
Target Start/End: Complemental strand, 34104090 - 34104003
Alignment:
Q  243 tttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaagga 330  Q
    |||||||| | |||||||||||| | || ||||||||||   |||||||||||||| ||||| ||||||||||||  |||||||||||    
T  34104090 tttggtatagggtgttggtggcgcgttacggtgaggaggcaaggaggttggaggatgggggctggagtggttcttgttggtggaagga 34104003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 39931134 - 39931197
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctt 317  Q
    ||||||||||| || ||||||| |||||||||| ||||||||||| ||||||||||| ||||||    
T  39931134 gtgttggtggctaggtatggtgtggaggatgggcggttggaggatgggggccggagttgttctt 39931197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 357
Target Start/End: Complemental strand, 20349574 - 20349463
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagatta 344  Q
    |||||| | |||||||||||  | |||||||||||||  ||||||||||||| ||||||| ||||||||||| | ||||||| |||| |   ||||||||    
T  20349574 tggtatagggtgttggtggctcggtatggtgaggaggcagggaggttggagg-taggggcaggagtggttctctttggtggagggagatagcgaagatta 20349476  T
Q  345 gagatggggtagg 357  Q
    | |||||| ||||    
T  20349475 gggatgggatagg 20349463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 357
Target Start/End: Complemental strand, 31423261 - 31423101
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    |||||||| || |||||||||||  ||||||||||||| | |||| | |||  | | ||||||||||| ||  |||||| || ||||||  | |||||||    
T  31423261 ttgttggggaaatggtgttggcggttgttagttgatagggatggtttgtggcgtagggtgttggtggctaggcatggtgtggcggatggtggtttggagg 31423162  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
    || ||||||||||| |||||| ||||| || |||| |  | | ||||||||||||| ||||    
T  31423161 atgggggccggagttgttcttcgtggttgagggagatagtcaggattagagatgggatagg 31423101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 234976 - 235079
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| || ||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| |  ||| |||||||||||||     
T  234976 gtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcgtggtggagggagatagtgaggattagagatggga 235075  T
Q  354 tagg 357  Q
    ||||    
T  235076 tagg 235079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 17721237 - 17721134
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||||||||| || ||||||| || ||||||  | ||||||||| ||||||||||| ||||||  ||||||| |||| |  ||| |||||||||||||     
T  17721237 gtgttggtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcatggtggagggagatagtgaggattagagatggga 17721138  T
Q  354 tagg 357  Q
    ||||    
T  17721137 tagg 17721134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 47877584 - 47877482
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||||||||| || ||||||| || ||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| |  ||| |||||||||||||     
T  47877584 gtgttggtggctaggtatggtgtggcggatggaggtttggaggat-ggggccggagttgttcttcgtggtggagggagatagtgaggattagagatggga 47877486  T
Q  354 tagg 357  Q
    ||||    
T  47877485 tagg 47877482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 8752925 - 8752973
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttgg 293  Q
    |||||| | ||| |||||||||||||||||||||||| |||||||||||    
T  8752925 tggtatagggtgctggtggcgagatatggtgaggaggctgggaggttgg 8752973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 23054476 - 23054548
Alignment:
Q  221 atgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttgg 293  Q
    ||||||||||||||||| ||  |||||||| | ||||||| ||| ||| ||||||||||||  ||||||||||    
T  23054476 atgttagttgatagaggagggttttggtatagggtgttggcggctagacatggtgaggaggcagggaggttgg 23054548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 41805285 - 41805328
Alignment:
Q  243 tttggtatcgagtgttggtggcgagatatggtgaggaggatggg 286  Q
    |||||||| | |||||||||||||||||||||||||||| ||||    
T  41805285 tttggtatagggtgttggtggcgagatatggtgaggaggttggg 41805328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 325
Target Start/End: Original strand, 33795924 - 33795966
Alignment:
Q  283 tgggaggttggaggataggggccggagtggttctttgtggtgg 325  Q
    |||||||||||||| | |||||||||||||||||| |||||||    
T  33795924 tgggaggttggagggtgggggccggagtggttcttcgtggtgg 33795966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 327
Target Start/End: Original strand, 15124338 - 15124443
Alignment:
Q  222 tgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtg 321  Q
    ||||||| |||| || | ||||||||||| | |||||| ||||| | ||||||  || | |||| |||||||||||| |||| |||||| ||||  ||||    
T  15124338 tgttagtcgatatagatagtctttggtatagggtgttgttggcgcggtatggtagggtgcatggtaggttggaggatgggggtcggagttgttccatgtg 15124437  T
Q  322 gtggaa 327  Q
    ||||||    
T  15124438 gtggaa 15124443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 92 - 441
Target Start/End: Original strand, 7956048 - 7956396
Alignment:
Q  92 agtgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatg 191  Q
    |||||||||||||| ||||||| |||||| |  ||||||||||| ||||  |||||||||||||| |||||||| ||||||||||||| | | |||||||    
T  7956048 agtgaggatcataggaaaatatattgggtaggatggaggactatttgttg-cgaaaggagtatggaggtttaggagttagacagttgagtatgtttaatg 7956146  T
Q  192 aggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggtt 291  Q
    ||||  ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  7956147 aggctctgttgggtaagtgatgttggcgtatgttagttgatagagatggtctttggtatcgagtgttggtggctagatatggtgaggaggacgggaggtt 7956246  T
Q  292 ggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggta-gggggcggtgttggttggtttaatgagggtgtggt 390  Q
    ||||||| | ||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||| ||||||||||  |||||||||| |||| |||||||    
T  7956247 ggaggat-gaggccggagtggttctttatggtggaagaaggttgtgaagattagagaaggggtaggggggcggtgaaggttggtttagtgagtgtgtggt 7956345  T
Q  391 gcgtcgtgtgggggatggggagtcttctcttttttggcatgatctgtggtg 441  Q
    |||||||||||||| |||| | ||  | |||||||||||||||| ||||||    
T  7956346 gcgtcgtgtggggggtgggaaatcaacgcttttttggcatgatcggtggtg 7956396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 94 - 434
Target Start/End: Complemental strand, 18589111 - 18588771
Alignment:
Q  94 tgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatgag 193  Q
    |||||||||||||||||| |||||||| || | || |  | | ||| | || |||||||| || |||||||| ||||||||| ||||||| |||||||||    
T  18589111 tgaggatcatagaaaaatttcttgggtagaatagacgtatgtttgtctgcggaaggagtacggaggtttaggtgttagacagatgaatgtgtttaatgag 18589012  T
Q  194 gcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttgg 293  Q
    ||  | ||||||||||||||||||||| |||||||||||||||  ||  | |||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  18589011 gctctattgggtaagtggtgttggcgtttgttagttgatagagacgggttatggtatcgagtgttggtggctagatatggtgaggaggacgggaggttgg 18588912  T
Q  294 aggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagggggcggtgttggttggtttaatgagggtgtggtgcg 393  Q
    ||||| |||| ||   ||||||||| |||||| |||||||| |||| |||||||||||| | |||||||||| ||| ||||||| |||| ||||||||||    
T  18588911 aggatgggggtcgtgttggttctttatggtgggaggaggttgtgaatattagagatgggttggggggcggtgatggatggtttagtgagtgtgtggtgcg 18588812  T
Q  394 tcgtgtgggggatggggagtcttctcttttttggcatgatc 434  Q
      ||||| |||||||||| ||  | ||||||||||||||||    
T  18588811 atgtgtgcgggatggggaatcaacgcttttttggcatgatc 18588771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 197 - 352
Target Start/End: Complemental strand, 32186342 - 32186187
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    ||||||| ||| ||||||||||   |||| || |||||||||||  |||||||| | |||||||||||||||||| |||||| || ||||||||||||||    
T  32186342 ttgttggataaatggtgttggcagttgttggtggatagaggtgggttttggtatagggtgttggtggcgagatatagtgaggtggctgggaggttggagg 32186243  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggg 352  Q
     | |||||||||||| |||||  ||||||| ||||||  |||||||||| ||||||    
T  32186242 ttgggggccggagtgcttcttcttggtggagggaggtagtgaagattagggatggg 32186187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 201 - 357
Target Start/End: Complemental strand, 19350599 - 19350443
Alignment:
Q  201 tgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggatag 300  Q
    ||||||| |||||||||||  ||||  | |||||||||||  |||||||| | ||||||||||||||||||||||||||||  ||||||||||||| | |    
T  19350599 tgggtaaatggtgttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgg 19350500  T
Q  301 gggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
    |||||||||||  || |  ||||||||||||||   ||||||||| ||||| |||||    
T  19350499 gggccggagtgtatcatcttggtggaaggaggtagcgaagattagggatggagtagg 19350443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 333
Target Start/End: Original strand, 12673493 - 12673735
Alignment:
Q  92 agtgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttagggg-ttagacagttgaatgtttttaat 190  Q
    |||||||||||||| ||||| |||||||| |  |||||  || | ||| |||| ||||||| ||||||||| |||| || |  ||||||| |  ||||||    
T  12673493 agtgaggatcataggaaaatctcttgggtaggatggagatctgtttgtatacggaaggagtgtggtggtttggggggtttggtagttgaaggagtttaat 12673592  T
Q  191 gaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctt-tggtatcgagtgttggtggcgagatatggtgaggaggatgggagg 289  Q
    | | ||||| |||| |||||||||| | |  | ||||| |||| ||| ||| || ||||||  |||||||||||| || |||||||||||||||  ||||    
T  12673593 gtgacgttgatgggaaagtggtgttagagatttttagtagatatagg-ggtattgtggtataaagtgttggtggctaggtatggtgaggaggatatgagg 12673691  T
Q  290 ttggaggataggggccggagtggttctttgtggtggaaggaggt 333  Q
    ||||||||| || | |||||| | ||||||||||||||||||||    
T  12673692 ttggaggatgggagtcggagttgctctttgtggtggaaggaggt 12673735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 10362732 - 10362672
Alignment:
Q  257 ttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctt 317  Q
    ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  10362732 ttggtggcgagatatggtgaggaggatgggaggttggaggtggggggccggagtggttctt 10362672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 352
Target Start/End: Original strand, 14843618 - 14843773
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    ||||| ||||| ||||||||||| ||||| || ||||||| |||| |||||||| | ||| |||| ||||||||||||||||||   |||||||||||||    
T  14843618 ttgttaggtaaatggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggagacagggaggttggagg 14843717  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggg 352  Q
       |||| ||||||  ||| |  ||||||||||| ||  |||||||||| ||||||    
T  14843718 tagggggacggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 14843773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 317
Target Start/End: Original strand, 502908 - 503133
Alignment:
Q  92 agtgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatg 191  Q
    |||||||||||||| ||||| |||||| | | ||||||  || | ||| ||| |||||||| ||| || |||||||||||||||||||| |  ||||||     
T  502908 agtgaggatcataggaaaatgtcttggataggttggagctctgtttgtctacaaaaggagtttggagggttaggggttagacagttgaaggagtttaata 503007  T
Q  192 aggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggtt 291  Q
      || ||  | || || ||||||||| | |||||||| ||||| |||||| |||| ||| |||| || || ||  | ||||| |||| |  |||||||||    
T  503008 ttgccttactagggaaatggtgttggaggatgttagtggataggggtggtttttgatatagagttttagtcgcccgttatggcgaggtgtgtgggaggtt 503107  T
Q  292 ggaggataggggccggagtggttctt 317  Q
    ||||||| ||||||||||| ||||||    
T  503108 ggaggatgggggccggagttgttctt 503133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 269 - 333
Target Start/End: Complemental strand, 29056106 - 29056042
Alignment:
Q  269 tatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggt 333  Q
    ||||||||||||||||||||||||| || | |||||||||||| ||||| |||||||||||||||    
T  29056106 tatggtgaggaggatgggaggttggcggttgggggccggagtgtttcttcgtggtggaaggaggt 29056042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 201 - 296
Target Start/End: Original strand, 29976493 - 29976588
Alignment:
Q  201 tgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    ||||||| ||| |||||||  ||||  | |||||||||||  |||||||| | ||||||||||||||||||||||||||||  |||||||||||||    
T  29976493 tgggtaaatggcgttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggagg 29976588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 188 - 334
Target Start/End: Complemental strand, 15602992 - 15602846
Alignment:
Q  188 aatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatggga 287  Q
    |||||||| |||||||| || |||||| || |  | |||||||||||| | ||  | |||||||  |||||||| || || ||||||| |   |||||||    
T  15602992 aatgaggcattgttggggaaatggtgtcggagattattagttgatagaagagggttatggtatcaggtgttggttgctaggtatggtgtgcgtgatggga 15602893  T
Q  288 ggttggaggataggggccggagtggttctttgtggtggaaggaggtt 334  Q
    ||||||||||| ||||||||||||||||| | ||||||| |||||||    
T  15602892 ggttggaggatgggggccggagtggttctatttggtggatggaggtt 15602846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 357
Target Start/End: Complemental strand, 26514335 - 26514223
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagatta 344  Q
    |||||| |||||||||||||  | |||||||||||||  ||||| ||||||| | ||||||||||||||||| | ||||||| |||| |   ||||||||    
T  26514335 tggtatagagtgttggtggctcggtatggtgaggaggcagggagtttggaggttgggggccggagtggttctatttggtggagggagatagcgaagatta 26514236  T
Q  345 gagatggggtagg 357  Q
    | |||||| ||||    
T  26514235 gggatgggatagg 26514223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 34434919 - 34434823
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttgg 293  Q
    ||||| ||||| ||||||||||| ||||| || || ||  || || | |||||| | || |||||||||||||||||||||||||||||||||||||    
T  34434919 ttgttaggtaaatggtgttggcggatgttggtagagaggagtagtatatggtatagggttttggtggcgagatatggtgaggaggatgggaggttgg 34434823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 333
Target Start/End: Original strand, 11060294 - 11060479
Alignment:
Q  148 ggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttgg 247  Q
    ||||| ||| ||||| ||||| |||| |||||| |  ||||||| ||  ||||| ||||||||||||||| | ||| ||||||||||  ||||  |||||    
T  11060294 ggagtttggaggtttgggggtgagacggttgaaagaatttaatgtggttttgttaggtaagtggtgttggaggatgctagttgataggagtggcttttgg 11060393  T
Q  248 tatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggt 333  Q
    |||||||| || || ||  | ||||| ||    | |||||||||||||| | ||||||||||| ||||||  ||||||| ||||||    
T  11060394 tatcgagtcttagttgcccgttatggcgaattaggtgggaggttggaggttgggggccggagttgttcttcttggtggagggaggt 11060479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 17605815 - 17605975
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    |||||||| || ||||||||| |  ||||||||||||| || ||| | |||  | | |||||| |||| || ||||| | |||||||||  | |||||||    
T  17605815 ttgttggggaaatggtgttggtggctgttagttgataggggaggtttgtggagtagggtgttgttggctaggtatggcgtggaggatggtggtttggagg 17605914  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
    || ||||||||||| ||||||  | ||||| |||| || ||| ||||||||||||| ||||    
T  17605915 atgggggccggagttgttcttctttgtggagggagattgtgaggattagagatgggatagg 17605975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 2554208 - 2554105
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| || ||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| | |||| | |||||||||||     
T  2554208 gtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcgtggtggagggagataatgagggttagagatggga 2554109  T
Q  354 tagg 357  Q
    ||||    
T  2554108 tagg 2554105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 13086111 - 13086044
Alignment:
Q  284 gggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgg 351  Q
    ||||||||||||| | ||||||||||| ||||||| ||||||||||||||   || ||||||||||||    
T  13086111 gggaggttggaggttgggggccggagttgttctttttggtggaaggaggtagggaggattagagatgg 13086044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 293
Target Start/End: Original strand, 10919955 - 10920041
Alignment:
Q  207 agtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttgg 293  Q
    ||||||||||| | ||||| ||||||||||| ||  |||||||| | |||||||| || || |||||||||||||  ||||||||||    
T  10919955 agtggtgttggaggatgttggttgatagaggggggttttggtatagggtgttggttgctaggtatggtgaggaggcggggaggttgg 10920041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 25350833 - 25350755
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggt 323  Q
    |||||| | |||||||||||| | ||||||||||||| ||||||||||| ||   |||||||||||| |||||| ||||    
T  25350833 tggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccggagtgattctttttggt 25350755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 12673430 - 12673479
Alignment:
Q  27 tcaaggatccatcaggtataatctcttccatagaatctcttttgattaaa 76  Q
    |||| ||||||||  |||||||||||||||||||||||||||||| ||||    
T  12673430 tcaacgatccatctagtataatctcttccatagaatctcttttgaataaa 12673479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 34180559 - 34180499
Alignment:
Q  221 atgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggagg 281  Q
    ||||||||||||||||| ||||||| |||| | |||||||  || ||||||||||||||||    
T  34180559 atgttagttgatagaggaggtctttcgtatagggtgttggctgctagatatggtgaggagg 34180499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 339
Target Start/End: Original strand, 1104428 - 1104570
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    ||||| ||||| ||||||||| || |||||||  ||||| ||||| | |||||| | ||| |||| ||  | |||||||||||||  | |||||||| ||    
T  1104428 ttgttaggtaaatggtgttggagtttgttagtaaatagatgtggtttgtggtatagggtgatggttgctcgttatggtgaggaggcagtgaggttggtgg 1104527  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggttatgaa 339  Q
     | |||||| |||| ||||||||| ||||| ||| ||| ||||    
T  1104528 ttgggggcctgagtagttctttgttgtggagggaagttgtgaa 1104570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 331
Target Start/End: Complemental strand, 10922144 - 10922078
Alignment:
Q  265 gagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggag 331  Q
    ||||||||||| ||||||||| ||| || ||||| ||||||||||| ||||||  ||||||| ||||    
T  10922144 gagatatggtgtggaggatggaaggctgaaggatgggggccggagttgttcttcttggtggagggag 10922078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 331
Target Start/End: Original strand, 17577199 - 17577333
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    |||||||| || ||||||||| |  ||||||||||||| || ||| | |||  | | |||||| |||| || ||||| | ||||||||   | |||||||    
T  17577199 ttgttggggaaatggtgttggaggctgttagttgataggggaggtttgtggagtagggtgttgttggctaggtatggcgtggaggatgatggtttggagg 17577298  T
Q  297 ataggggccggagtggttctttgtggtggaaggag 331  Q
    || |||||| |||| ||||||||||||||| ||||    
T  17577299 atgggggccagagttgttctttgtggtggagggag 17577333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 23065613 - 23065663
Alignment:
Q  283 tgggaggttggaggataggggccggagtggttctttgtggtggaaggaggt 333  Q
    ||||||||||||||   |||||||||||||||||| ||||||| |||||||    
T  23065613 tgggaggttggaggtggggggccggagtggttcttcgtggtggcaggaggt 23065663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 317
Target Start/End: Complemental strand, 19256287 - 19256179
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccgga 308  Q
    ||||||||| | |||||||| ||||| |||||| |||||||| |||| || || ||  | ||||| |||| |  |||||||||||||| | |||||| ||    
T  19256287 tggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgcccgttatggcgaggtgtgtgggaggttggaggttgggggccaga 19256188  T
Q  309 gtggttctt 317  Q
    || ||||||    
T  19256187 gttgttctt 19256179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 34 - 359
Target Start/End: Complemental strand, 7099302 - 7098979
Alignment:
Q  34 tccatcaggtataatctcttccatagaatctcttttgattaaannnnnnnnnnnnnnaagtgaggatcatagaaaaatatcttgggtggattggaggact 133  Q
    ||||||| |||||||||||||||||||||||||||||||||||              | ||||||||||||||||| | |||||||| |  |||||| |     
T  7099302 tccatcaagtataatctcttccatagaatctcttttgattaaatttttttaggaggga-gtgaggatcatagaaaagtttcttgggtaggctggaggtcg 7099204  T
Q  134 atctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgata 233  Q
     | ||| | | |||||||||||| ||||| || ||||| |||||||  |  |||||||||||||||||||| |||| ||||||| || |||||||||||     
T  7099203 tt-tgtatgctaaaggagtatggaggtttgggtgttaggcagttgagggagtttaatgaggcgttgttgggaaagttgtgttggagtttgttagttgatc 7099105  T
Q  234 gaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggt 333  Q
    |||  ||| | |||||||| || ||| | || ||||||||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||||    
T  7099104 gagagggtttgtggtatcgggttttgatagctagatatggtgaggaggatgagaggttggaggatgggggccggagtggttctatttggtggaaggaggt 7099005  T
Q  334 tatgaagattagagatggggtagggg 359  Q
    | |||||||||| |||||||| ||||    
T  7099004 tgtgaagattagggatggggttgggg 7098979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 93 - 334
Target Start/End: Complemental strand, 40688829 - 40688588
Alignment:
Q  93 gtgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatga 192  Q
    |||||||||||||||||||||||||||||| ||||  ||  || ||| |  |||||||||||||||||||||| ||||| |||||||  |  ||||||||    
T  40688829 gtgaggatcatagaaaaatatcttgggtgggttggcagagaatttgtatgagaaaggagtatggtggtttaggagttaggcagttgagggagtttaatga 40688730  T
Q  193 ggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttg 292  Q
    ||||||||| || |||||||||||| |  |  | |||||| |||| ||  | |||||||| |||||||| |  ||||||||||    |||||||||||||    
T  40688729 ggcgttgttagggaagtggtgttggaggttacttgttgatcgaggagggttgtggtatcgggtgttggttggtagatatggtgttagggatgggaggttg 40688630  T
Q  293 gaggataggggccggagtggttctttgtggtggaaggaggtt 334  Q
    |||||| ||||||||||||||||||| |||||||||||||||    
T  40688629 gaggatgggggccggagtggttctttttggtggaaggaggtt 40688588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 334
Target Start/End: Original strand, 19162553 - 19162795
Alignment:
Q  92 agtgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatg 191  Q
    ||||||||||||||||||||||||| ||||| ||||  ||   | ||| |  |||||||||||||||||||||| ||||| | |||||  |  |||||||    
T  19162553 agtgaggatcatagaaaaatatcttaggtgggttggcagagagtttgtatgagaaaggagtatggtggtttaggagttaggcggttgagggagtttaatg 19162652  T
Q  192 aggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggtt 291  Q
    |||||||||| || |||||||| ||| |  |  | |||||| | || ||  | |||||| | |||||||| || ||||||||||    ||| ||||||||    
T  19162653 aggcgttgttagggaagtggtgatggagattacttgttgatcgtggagggttgtggtatagggtgttggttgctagatatggtgttagggacgggaggtt 19162752  T
Q  292 ggaggataggggccggagtggttctttgtggtggaaggaggtt 334  Q
    ||||||| ||||||||||||||||||| |||||||||||||||    
T  19162753 ggaggatgggggccggagtggttctttttggtggaaggaggtt 19162795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 352
Target Start/End: Original strand, 29553245 - 29553376
Alignment:
Q  221 atgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgt 320  Q
    |||||||| |||||||||||| |||||||| |||| || ||  |  | ||||||||||    |||||||||||||||| |||||||||||||||||||||    
T  29553245 atgttagtggatagaggtggtttttggtatagagttttagtcacccgttatggtgaggtttgtgggaggttggaggatgggggccggagtggttctttgt 29553344  T
Q  321 ggtggaaggaggttatgaagattagagatggg 352  Q
    |||||  |||||||| | ||||||| ||||||    
T  29553345 ggtggcgggaggttaggcagattagggatggg 29553376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 225 - 333
Target Start/End: Complemental strand, 9778001 - 9777893
Alignment:
Q  225 tagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtg 324  Q
    ||||||||| |||| || | |||||| | |||||||| ||| | ||| ||||||||||||||||||||  || | |||||||||||| ||||||||||||    
T  9778001 tagttgataaaggtagtatatggtatagggtgttggtagcgcgttatagtgaggaggatgggaggttgacggttgggggccggagtgtttctttgtggtg 9777902  T
Q  325 gaaggaggt 333  Q
    |||||||||    
T  9777901 gaaggaggt 9777893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 357
Target Start/End: Complemental strand, 9691081 - 9690921
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    ||||||||||| ||||||||| |  |||| || |||||| ||||  |||||||| | ||| | || || |||||||||||||||| ||||||||||||||    
T  9691081 ttgttgggtaaatggtgttggaggttgttggtggatagatgtgggttttggtatagggtgctagtagctagatatggtgaggaggctgggaggttggagg 9690982  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
     | |||||||||||| ||||   ||||||| |||| |   ||||||||| ||||| |||||    
T  9690981 ttgggggccggagtgtttctcattggtggagggagatagcgaagattagggatggtgtagg 9690921  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 23642129 - 23642232
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| |||||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| || ||| |||||||||||||     
T  23642129 gtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgaggattagagatggga 23642228  T
Q  354 tagg 357  Q
    ||||    
T  23642229 tagg 23642232  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 23647787 - 23647890
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| |||||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| || ||| |||||||||||||     
T  23647787 gtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgaggattagagatggga 23647886  T
Q  354 tagg 357  Q
    ||||    
T  23647887 tagg 23647890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 47419406 - 47419303
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| |||||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| || ||| |||||||||||||     
T  47419406 gtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgaggattagagatggga 47419307  T
Q  354 tagg 357  Q
    ||||    
T  47419306 tagg 47419303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 317
Target Start/End: Complemental strand, 8935838 - 8935613
Alignment:
Q  92 agtgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatg 191  Q
    ||||||||||| || ||||| |||| | | ||||||||  || | ||| | | |||||||| ||| || |||||||||||||||||||| |  ||||||     
T  8935838 agtgaggatcacaggaaaatgtcttagatagattggagttctgtttgtctccaaaaggagtttggagggttaggggttagacagttgaaggagtttaata 8935739  T
Q  192 aggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggtt 291  Q
      || ||  | || || ||||||||| | |||||||| ||||| |||||| |||||||| |||| || || ||  | ||||| |||| |  |||||||||    
T  8935738 ttgccttactagggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgctcgttatggcgaggtgtgtgggaggtt 8935639  T
Q  292 ggaggataggggccggagtggttctt 317  Q
    ||||||| ||||||||||| ||||||    
T  8935638 ggaggatgggggccggagttgttctt 8935613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 48805562 - 48805501
Alignment:
Q  272 ggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggt 333  Q
    ||||||| ||||||||||||||||  | || |||||||||||||||||||||||||||||||    
T  48805562 ggtgaggtggatgggaggttggagattgggtgccggagtggttctttgtggtggaaggaggt 48805501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 2365641 - 2365545
Alignment:
Q  221 atgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctt 317  Q
    ||||||||||||||||| ||| | |||||| | |||||||| ||  | |||||||||||||  ||||||||| ||||| |||| |||||||||||||    
T  2365641 atgttagttgatagaggaggtttatggtatagggtgttggttgctcgttatggtgaggaggtagggaggttgaaggatgggggtcggagtggttctt 2365545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 296
Target Start/End: Complemental strand, 38296377 - 38296266
Alignment:
Q  185 tttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatg 284  Q
    |||||||||||||| || || || |||||||||||  | ||||| || ||  |  || |||||||| | ||||||||||||||||||||||||| | |||    
T  38296377 tttaatgaggcgttattagggaaatggtgttggcggttattagtggagaggaggagtttttggtatagggtgttggtggcgagatatggtgaggtgaatg 38296278  T
Q  285 ggaggttggagg 296  Q
    ||||||||||||    
T  38296277 ggaggttggagg 38296266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 203 - 357
Target Start/End: Complemental strand, 2072193 - 2072039
Alignment:
Q  203 ggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggg 302  Q
    ||||| ||||| ||||  ||||| || |||||||| ||  | |||||| | ||| ||||||||||||||||||||||||   ||||||| |||| | |||    
T  2072193 ggtaaatggtgatggcagatgttggtggatagaggagggatgtggtatagggtgctggtggcgagatatggtgaggaggcaaggaggttagaggttgggg 2072094  T
Q  303 gccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
    | ||||||| |||||  ||||||| |||| |  |||||||||| || ||||||||    
T  2072093 gacggagtgtttcttgctggtggagggagttagtgaagattagggacggggtagg 2072039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 188 - 326
Target Start/End: Complemental strand, 54685278 - 54685140
Alignment:
Q  188 aatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatggga 287  Q
    |||||||| |||||||| || ||||||||| |  | |||||||||||| | ||  | |||||||  |||||||| || || ||||||| |   |||||||    
T  54685278 aatgaggcattgttggggaaatggtgttggagattattagttgatagaagagggttatggtatcaggtgttggttgctaggtatggtgtgcgtgatggga 54685179  T
Q  288 ggttggaggataggggccggagtggttctttgtggtgga 326  Q
    ||||||||||| |||||| |||||||||| | |||||||    
T  54685178 ggttggaggatgggggccagagtggttctatttggtgga 54685140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 331
Target Start/End: Original strand, 55725199 - 55725321
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccgga 308  Q
    ||||||||| |  ||||||| ||||||| |||  | |||||| | ||||||||||| || ||||||| |||||||||  | ||||||||| |||||||||    
T  55725199 tggtgttggaggttgttagtagatagagatggattatggtatagggtgttggtggctaggtatggtgtggaggatggtggtttggaggatgggggccgga 55725298  T
Q  309 gtggttctttgtggtggaaggag 331  Q
    || ||||||  ||||||| ||||    
T  55725299 gttgttcttcttggtggagggag 55725321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 36183133 - 36183077
Alignment:
Q  260 gtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttct 316  Q
    ||||| ||||||||||||||||||||| ||||||||| | |||||||||||| ||||    
T  36183133 gtggcaagatatggtgaggaggatgggcggttggaggttgggggccggagtgtttct 36183077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 53100416 - 53100492
Alignment:
Q  155 ggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttga 231  Q
    ||||||||||| |||||| | ||||  |  ||||||| |||||| ||||| ||||||||||||||||||||||||||    
T  53100416 ggtggtttaggcgttagaaaattgagggaatttaatgtggcgttattggggaagtggtgttggcgtatgttagttga 53100492  T

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Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 5789630 - 5789733
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| ||||| |||  | ||||||||| ||||||||||| ||||||  ||||||  |||| || |||||||||||||||||     
T  5789630 gtgttagtggctaggtatggtgtggagggtggaggtttggaggatgggggccggagttgttcttcttggtggcgggagattgtgaagattagagatggga 5789729  T
Q  354 tagg 357  Q
    ||||    
T  5789730 tagg 5789733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 19755869 - 19755766
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| || ||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| |  ||| |||||||||||||     
T  19755869 gtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcgtggtggagggagatagtgaggattagagatggga 19755770  T
Q  354 tagg 357  Q
    ||||    
T  19755769 tagg 19755766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 19783937 - 19784040
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| || ||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| |  ||| |||||||||||||     
T  19783937 gtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcgtggtggagggagatagtgaggattagagatggga 19784036  T
Q  354 tagg 357  Q
    ||||    
T  19784037 tagg 19784040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 52617406 - 52617460
Alignment:
Q  257 ttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtg 311  Q
    |||||||||||||||||||||||||  | ||||||||||| ||| ||||||||||    
T  52617406 ttggtggcgagatatggtgaggaggcagagaggttggaggttagaggccggagtg 52617460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 48312696 - 48312619
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggag 331  Q
    ||||||||||| || ||||||| || ||||||  | ||||||||| ||||||||||| |||||| |||||||| ||||    
T  48312696 gtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggccggagttgttcttcgtggtggagggag 48312619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 7662737 - 7662842
Alignment:
Q  145 aaaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctt 244  Q
    ||||||| |||| ||||| ||||| ||||||||||| |  ||||||   || ||||| ||||| ||||||||||| ||||| || || ||||||||| |     
T  7662737 aaaggagaatggaggtttgggggtgagacagttgaaggaatttaatagtgctttgttaggtaaatggtgttggcggatgttggtggacagaggtggtttg 7662836  T
Q  245 tggtat 250  Q
    ||||||    
T  7662837 tggtat 7662842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 29328318 - 29328387
Alignment:
Q  257 ttggtggcgagatatggtgaggaggatgggaggttggagg-ataggggccggagtggttctttgtggtgg 325  Q
    ||||| ||||| |||||||||||||  |||||||||||||   || ||||||||||||||||| ||||||    
T  29328318 ttggtcgcgaggtatggtgaggaggtggggaggttggaggtggagaggccggagtggttctttttggtgg 29328387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 93 - 441
Target Start/End: Original strand, 44028597 - 44028940
Alignment:
Q  93 gtgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatga 192  Q
    |||||||| ||||||||||||||||||| |  ||||||  | | |||||||||||||||||||| ||||| || |||||||||||||| |  ||||||||    
T  44028597 gtgaggattatagaaaaatatcttgggtaggatggaggtatgtgtgtttacgaaaggagtatggaggtttgggtgttagacagttgaaggagtttaatga 44028696  T
Q  193 ggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttg 292  Q
    ||||||| | ||||||||||| ||| | |||||||| ||||||| |||  | ||||| || ||||| | ||||||||||||||||||||| |||||||||    
T  44028697 ggcgttgctaggtaagtggtgctggaggatgttagtggatagagatgggttgtggtaccgtgtgtttgcggcgagatatggtgaggaggacgggaggttg 44028796  T
Q  293 gaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagggggcggtg---ttggttggtttaatgagggtgtgg 389  Q
           |||| |||||||||| |  || ||||  ||||||| |||||||||| |||||| || |||||||||    ||||||||||   ||  ||||||    
T  44028797 -------ggggtcggagtggttttacgttgtgggcggaggttgtgaagattagggatgggatatggggcggtgataatggttggttttgggaaagtgtgg 44028889  T
Q  390 tgcgtcgtgtgggggatggggagtcttctcttttttggcatgatctgtggtg 441  Q
    ||   ||| |||| ||||||||| |  |||||||||||||||||| ||||||    
T  44028890 tgtcgcgtatgggtgatggggag-ccactcttttttggcatgatcggtggtg 44028940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 103 - 376
Target Start/End: Complemental strand, 13416424 - 13416148
Alignment:
Q  103 tagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttg 202  Q
    |||||||||||||||||||   |||  || | | ||| || ||||| |||||||||| ||||| ||||| | |||||  |  |||||||||||||||||     
T  13416424 tagaaaaatatcttgggtgagctggcagagtgtgtgtgtaagaaagaagtatggtggattaggagttaggcggttgagggagtttaatgaggcgttgtta 13416325  T
Q  203 ggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggg 302  Q
    || |||||||||||| |  |  | |||||| |  | ||  | |||||||| |||||||| || || ||||||| |   |||||||||||||||||| |||    
T  13416324 gggaagtggtgttggaggttacttgttgatcgttgagggttgtggtatcgggtgttggttgctaggtatggtgtgcgtgatgggaggttggaggatgggg 13416225  T
Q  303 gccggagtggttctttgtggtggaaggaggttatgaagattagagatgg---ggtagggggcggtgttggttggttt 376  Q
    |||||||||||||| | ||||||||||||||||  | ||||||||| ||   ||  |||||||||||||| ||||||    
T  13416224 gccggagtggttctatttggtggaaggaggttagtaggattagagaagggcagggtgggggcggtgttggctggttt 13416148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 185 - 314
Target Start/End: Complemental strand, 26146886 - 26146757
Alignment:
Q  185 tttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatg 284  Q
    |||||||  |||||||| || || |||||||||||| |||| || || ||  || || | |||||| | |||||||||||||||||||| ||||||||||    
T  26146886 tttaatgttgcgttgttaggcaaatggtgttggcgtttgttggtggagaggagtagtttgtggtatagggtgttggtggcgagatatggcgaggaggatg 26146787  T
Q  285 ggaggttggaggataggggccggagtggtt 314  Q
    |||||||||||| | |||||||||||||||    
T  26146786 ggaggttggaggttgggggccggagtggtt 26146757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 43310870 - 43310798
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctt 317  Q
    |||||| | |||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||    
T  43310870 tggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagtggttctt 43310798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 347
Target Start/End: Original strand, 2207250 - 2207453
Alignment:
Q  144 gaaaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtct 243  Q
    |||||||||||||||| ||||| ||||||| |||||  |  ||||||||||||||||| || |||||||||||| |  |  | || ||  | || ||  |    
T  2207250 gaaaggagtatggtgggttaggagttagacggttgagggagtttaatgaggcgttgttagggaagtggtgttggagattacttgtggaccgtggagggtt 2207349  T
Q  244 ttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagatt 343  Q
     |||||| | |||||||| ||  ||||||||| |  | | ||||||||||||||| |||||||| |||||||||| |||||||||||||||  || ||||    
T  2207350 gtggtatagggtgttggtcgctcgatatggtgtgaggaacgggaggttggaggatgggggccggggtggttctttttggtggaaggaggttgggaggatt 2207449  T
Q  344 agag 347  Q
    ||||    
T  2207450 agag 2207453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 325
Target Start/End: Complemental strand, 37445740 - 37445624
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccgga 308  Q
    |||||||||||| ||||||||||||| | |||  | |||  | | ||||||||||| || ||||||| ||||||  |||||||||||||| |||||||||    
T  37445740 tggtgttggcgtctgttagttgatagtgatgggttctggcgtagggtgttggtggctaggtatggtgcggaggacaggaggttggaggatgggggccgga 37445641  T
Q  309 gtggttctttgtggtgg 325  Q
    || |||||| |||||||    
T  37445640 gttgttcttcgtggtgg 37445624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 331
Target Start/End: Complemental strand, 14440391 - 14440269
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccgga 308  Q
    |||||||||||| ||||||||||||| |||||| | |||| | | |||||| |||| || ||||||  || ||||||  | ||||||||| |||||||||    
T  14440391 tggtgttggcgtttgttagttgataggggtggtttgtggtgtagggtgttgttggctaggtatggtatggcggatggtggtttggaggatgggggccgga 14440292  T
Q  309 gtggttctttgtggtggaaggag 331  Q
    || |||||| |||||||| ||||    
T  14440291 gttgttcttcgtggtggagggag 14440269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 317
Target Start/End: Complemental strand, 10689225 - 10689094
Alignment:
Q  185 tttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatg 284  Q
    |||||||  |||||||| || ||||||||||||||| | || || || ||  || || | |||||| | |||||||||| |||||||||||| |||| |     
T  10689225 tttaatgttgcgttgttaggaaagtggtgttggcgtttattggtggagaggagtagtttatggtatagggtgttggtggtgagatatggtgatgaggcta 10689126  T
Q  285 ggaggttggaggataggggccggagtggttctt 317  Q
    |||||||||||| | ||||||||||||||||||    
T  10689125 ggaggttggagg-ttggggccggagtggttctt 10689094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 281 - 331
Target Start/End: Original strand, 6727343 - 6727393
Alignment:
Q  281 gatgggaggttggaggataggggccggagtggttctttgtggtggaaggag 331  Q
    |||||||||||||||||| ||||||||||||||||| | ||||||||||||    
T  6727343 gatgggaggttggaggatgggggccggagtggttctatttggtggaaggag 6727393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 6824010 - 6823916
Alignment:
Q  257 ttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgg 351  Q
    |||| ||||||||||| ||||||||  ||||||||||||| | |||||||||||| |||   |||||||||||||||   ||||||||| |||||    
T  6824010 ttggcggcgagatatgttgaggaggcagggaggttggaggttgggggccggagtgtttcaccgtggtggaaggaggtagcgaagattagggatgg 6823916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 22725007 - 22725076
Alignment:
Q  284 gggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||||||||||||| ||||||||||| |||||| |||||||  | ||||| ||| |||| |||||||||    
T  22725007 gggaggttggaggatgggggccggagttgttcttcgtggtggcggaaggttgtgaggatttgagatgggg 22725076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 44028524 - 44028572
Alignment:
Q  27 tcaaggatccatcaggtataatctcttccatagaatctcttttgattaa 75  Q
    |||||| ||||||| ||||||||||||| || |||||||||||||||||    
T  44028524 tcaaggctccatcatgtataatctcttctattgaatctcttttgattaa 44028572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 6787785 - 6787748
Alignment:
Q  91 aagtgaggatcatagaaaaatatcttgggtggattgga 128  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  6787785 aagtgaggatcataggaaaatatcttgtgtggattgga 6787748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 255
Target Start/End: Complemental strand, 11028568 - 11028471
Alignment:
Q  158 ggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagt 255  Q
    ||||||||||| ||||||||||| |  |||||| |||| ||||| || |||||||||||| | ||| | ||||||||  ||||| | ||||| |||||    
T  11028568 ggtttaggggtgagacagttgaaggagtttaatcaggctttgttaggaaagtggtgttggaggatgcttgttgataggagtggtttgtggtaccgagt 11028471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 137 - 345
Target Start/End: Complemental strand, 31675650 - 31675442
Alignment:
Q  137 tgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagag 236  Q
    |||||||||||||||||||| || |||||||| ||||||||||  |  |||||  | || ||||| ||||| ||||||||||| ||||| || |||||||    
T  31675650 tgtttacgaaaggagtatggagggttaggggtgagacagttgagggagtttaaccatgctttgttaggtaaatggtgttggcgaatgttggtggatagag 31675551  T
Q  237 gtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttat 336  Q
    ||||| |||||||| | ||| |||||| |||||||||||||||||  |||||||||||||   |||||||||||  ||| |  ||||||||||| ||  |    
T  31675550 gtggtttttggtatagggtgctggtggtgagatatggtgaggaggcagggaggttggaggtagggggccggagtacttcatcttggtggaaggaagtagt 31675451  T
Q  337 gaagattag 345  Q
    |||||||||    
T  31675450 gaagattag 31675442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 137 - 310
Target Start/End: Original strand, 31920772 - 31920945
Alignment:
Q  137 tgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagag 236  Q
    |||||||||||||||||||| || ||||| || ||||||||||  |  |||||  | || ||||| ||||| ||||||||||| ||||| || |||||||    
T  31920772 tgtttacgaaaggagtatggagggttaggagtgagacagttgagggagtttaaccatgctttgttaggtaaatggtgttggcgaatgttggtggatagag 31920871  T
Q  237 gtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagt 310  Q
    ||||| |||||||| | ||| |||||| |||||||||||||||||  |||||||||||||   |||||||||||    
T  31920872 gtggtttttggtatagggtgctggtggtgagatatggtgaggaggcagggaggttggaggtagggggccggagt 31920945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 185 - 317
Target Start/End: Original strand, 52250594 - 52250725
Alignment:
Q  185 tttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatg 284  Q
    |||||||  |||||||| || || |||||||||||| |||| || || || ||| || | |||||| | |||||||||||||||||||||||||||||||    
T  52250594 tttaatgttgcgttgttagggaaatggtgttggcgtttgttggtggagag-ggtagtttatggtatagggtgttggtggcgagatatggtgaggaggatg 52250692  T
Q  285 ggaggttggaggataggggccggagtggttctt 317  Q
    |||||||||||| | ||||||||||||||||||    
T  52250693 ggaggttggaggttgggggccggagtggttctt 52250725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 137 - 351
Target Start/End: Complemental strand, 55367328 - 55367115
Alignment:
Q  137 tgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagag 236  Q
    |||| ||||||||||||||| ||||  ||||| ||  ||||||| |  ||||||   |||||||| || || ||||||||| | ||||||||||||||||    
T  55367328 tgttcacgaaaggagtatgggggttg-ggggtgaggaagttgaaggaatttaatcttgcgttgttaggaaaatggtgttggaggatgttagttgatagag 55367230  T
Q  237 gtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttat 336  Q
    ||||  | ||||||   || ||| | |||||||||||||||||||  | |||||||||||   |||||||||||| ||| || ||||||| |||| | |     
T  55367229 gtgggttgtggtataaggttttgttagcgagatatggtgaggaggcagagaggttggaggtagggggccggagtgattccttttggtggatggagataac 55367130  T
Q  337 gaagattagagatgg 351  Q
    |||||||||||||||    
T  55367129 gaagattagagatgg 55367115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 333
Target Start/End: Complemental strand, 19875895 - 19875766
Alignment:
Q  204 gtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggatagggg 303  Q
    |||| |||||||||||  ||||  | |||||||||||  |||||||| | ||||||||||||||||||||||||||||   |||||||||||| | ||||    
T  19875895 gtaaatggtgttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcaaggaggttggaggttggggg 19875796  T
Q  304 ccggagtggttctttgtggtggaaggaggt 333  Q
    ||||||||  || |  ||||||||||||||    
T  19875795 ccggagtgtatcatcttggtggaaggaggt 19875766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 203 - 331
Target Start/End: Complemental strand, 18381711 - 18381584
Alignment:
Q  203 ggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggg 302  Q
    ||||||||||||||| | ||||| ||||||||||| ||  | |||||| | || |||||||||||||||||||| |||||||| |||||||| | |||||    
T  18381711 ggtaagtggtgttggagaatgttggttgatagaggagggttatggtattgggttttggtggcgagatatggtgacgaggatggaaggttggatg-taggg 18381613  T
Q  303 gccggagtggttctttgtggtggaaggag 331  Q
    | ||||||| |||| | ||||||| ||||    
T  18381612 ggcggagtgtttctatttggtggagggag 18381584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 48930325 - 48930257
Alignment:
Q  257 ttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtgg 325  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||  |||||||    
T  48930325 ttggtggcgagatatggtgaggaggatgggaggttggaggttgggggctggagtggttctgcgtggtgg 48930257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 333
Target Start/End: Complemental strand, 44888562 - 44888427
Alignment:
Q  198 tgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagga 297  Q
    |||| ||||| ||||||||| |  | ||||||||||  ||| || | |||||| | |||||||||||| | ||||||||||||||||||||||||| ||     
T  44888562 tgttaggtaaatggtgttggaggttattagttgataagggtagtatgtggtatagggtgttggtggcgcgttatggtgaggaggatgggaggttggtggt 44888463  T
Q  298 taggggccggagtggttctttgtggtggaaggaggt 333  Q
    |  ||| ||||||| ||||| |||||||||||||||    
T  44888462 tgagggtcggagtgtttcttcgtggtggaaggaggt 44888427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 317
Target Start/End: Complemental strand, 6825469 - 6825361
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccgga 308  Q
    |||||||||||| |||| ||||| ||  || || | |||||| | |||||||||||| | ||||||||||||||||||||||||| || | |||||||||    
T  6825469 tggtgttggcgtttgttggttgagaggagtagtttatggtatagggtgttggtggcgcggtatggtgaggaggatgggaggttggcggttgggggccgga 6825370  T
Q  309 gtggttctt 317  Q
    | |||||||    
T  6825369 gaggttctt 6825361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 2364879 - 2364776
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| |||||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| || ||| |||||||||||||     
T  2364879 gtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgaggattagagatggga 2364780  T
Q  354 tagg 357  Q
    ||||    
T  2364779 tagg 2364776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 209 - 356
Target Start/End: Original strand, 25024337 - 25024484
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccgga 308  Q
    ||||||||| | |||||||| ||||||| |||| |||||||| | |||||||  || ||||||||||||||||  |||||||||| || | |||| ||||    
T  25024337 tggtgttggaggatgttagtggatagagatggtttttggtatagggtgttggaagctagatatggtgaggaggcagggaggttggcggttgggggtcgga 25024436  T
Q  309 gtggttctttgtggtggaaggaggttatgaagattagagatggggtag 356  Q
    || ||||||  |||||||  ||||||   | |||||||||||| ||||    
T  25024437 gttgttcttattggtggagagaggttgataggattagagatggagtag 25024484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 339
Target Start/End: Original strand, 5342717 - 5342835
Alignment:
Q  221 atgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgt 320  Q
    ||||||||||||||| | ||| | |||||| | || || |||||  | |||| | ||||||  | |||||||||||||||||||||||||||||||| ||    
T  5342717 atgttagttgatagaagaggtttatggtatagcgtatttgtggctcgttatgttaaggaggtagagaggttggaggataggggccggagtggttcttcgt 5342816  T
Q  321 ggtggaaggaggttatgaa 339  Q
    |||||| ||||||| ||||    
T  5342817 ggtggagggaggttgtgaa 5342835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 8130526 - 8130472
Alignment:
Q  281 gatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggtta 335  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  8130526 gatgggaggttggaggttgggggccggagtggttctttttggtggaaggaggtta 8130472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 12341736 - 12341896
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    |||||||| || |||||||||||  ||||||||||||| || ||| | |||  | | |||||| |||| || ||||| | |||||||||  | |||||||    
T  12341736 ttgttggggaaatggtgttggcggctgttagttgataggggaggtttgtggagtagggtgttgttggctaggtatggcgtggaggatggtggtttggagg 12341835  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
    || ||||||||||| | |||| |||||||| |||| || | | ||||||||||||| ||||    
T  12341836 atgggggccggagttgctcttcgtggtggagggagattgttaggattagagatgggatagg 12341896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 31547974 - 31547894
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggat-aggggccggagtggttctttgtggtggaaggaggt 333  Q
    |||||||| ||| | ||||||||||||||||||||||||| || |  |||||||||||| ||||| |||||||||||||||    
T  31547974 gtgttggtagcgcgttatggtgaggaggatgggaggttggtggttggggggccggagtgtttcttcgtggtggaaggaggt 31547894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 9510402 - 9510327
Alignment:
Q  206 aagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggagg 281  Q
    |||||||||||| | ||||||||| ||||||||||| |||||||||| |||||||  || || |||||||||||||    
T  9510402 aagtggtgttggaggatgttagttaatagaggtggtttttggtatcgggtgttggctgcaaggtatggtgaggagg 9510327  T

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Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 281
Target Start/End: Complemental strand, 9518377 - 9518302
Alignment:
Q  206 aagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggagg 281  Q
    |||||||||||| | ||||||||| ||||||||||| |||||||||| |||||||  || || |||||||||||||    
T  9518377 aagtggtgttggaggatgttagttaatagaggtggtttttggtatcgggtgttggctgcaaggtatggtgaggagg 9518302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 10323109 - 10323212
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| |||||||||  | ||||||||| |||||||||||  ||||| |||||||| |||| || ||| |||||||||||||     
T  10323109 gtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttattcttcgtggtggagggagattgtgaggattagagatggga 10323208  T
Q  354 tagg 357  Q
    ||||    
T  10323209 tagg 10323212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 19919767 - 19919870
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| ||||||||   | ||||||||| ||||||||||| |||||| |||||||| |||| || ||| |||||||||||||     
T  19919767 gtgttagtggctaggtatggtgtggaggatgacggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgaggattagagatggga 19919866  T
Q  354 tagg 357  Q
    ||||    
T  19919867 tagg 19919870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 345
Target Start/End: Original strand, 22734229 - 22734352
Alignment:
Q  222 tgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtg 321  Q
    ||||||| ||||||||| |||| | |||| | |||||| || |  ||||||||| || | |||| |||||||||||| ||||||||||| ||||  ||||    
T  22734229 tgttagtcgatagaggtagtctgttgtatagggtgttgttgacacgatatggtgcggtgcatggtaggttggaggatgggggccggagttgttccatgtg 22734328  T
Q  322 gtggaaggaggttatgaagattag 345  Q
    |||||| ||| |  ||||||||||    
T  22734329 gtggaaagagatagtgaagattag 22734352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 53941905 - 53941802
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    |||||||||||| | ||||||||||||| ||||||||||| ||   |||||||||||| |||||| | ||||| |||| |   ||||||||| ||||| |    
T  53941905 gtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccggagtgattctttttagtggagggagatagcgaagattagggatggag 53941806  T
Q  354 tagg 357  Q
    ||||    
T  53941805 tagg 53941802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 255
Target Start/End: Complemental strand, 23819274 - 23819165
Alignment:
Q  146 aaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtcttt 245  Q
    ||||||| ||| ||||| ||||  ||||||||||| |  |||||| |||| ||||| || |||||||||||| | ||| | ||||||||  ||||| |||    
T  23819274 aaggagtttggaggtttgggggcgagacagttgaaggaatttaatcaggctttgttaggaaagtggtgttggaggatgcttgttgataggagtggttttt 23819175  T
Q  246 ggtatcgagt 255  Q
    ||||||||||    
T  23819174 ggtatcgagt 23819165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 352
Target Start/End: Complemental strand, 19891324 - 19891181
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccgga 308  Q
    |||||||||||  ||||||||||||| | |||| | |||  | | ||||||||||| || ||||||| ||  |||||  | ||||||||| ||||||| |    
T  19891324 tggtgttggcgattgttagttgatagggttggtttgtggcgtagggtgttggtggctaggtatggtgtggcagatggtggtttggaggatgggggccgaa 19891225  T
Q  309 gtggttctttgtggtggaaggaggttatgaagattagagatggg 352  Q
    || |||||| |||||||| |||| |  | | |||||||||||||    
T  19891224 gttgttcttcgtggtggagggagatagtcaggattagagatggg 19891181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 34332353 - 34332456
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| || ||||||  | ||||||||| ||||| ||||| |||||| |||||||| |||| |  ||| |||||||||||||     
T  34332353 gtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggggcgggagttgttcttcgtggtggagggagatagtgaggattagagatggga 34332452  T
Q  354 tagg 357  Q
    ||||    
T  34332453 tagg 34332456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 311
Target Start/End: Original strand, 40513148 - 40513319
Alignment:
Q  140 ttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtg 239  Q
    ||||| ||||||||||| ||||| ||||| ||  ||||| | | |||||||   || ||||| ||||| ||||||||||| ||||| || ||||||||||    
T  40513148 ttacgtaaggagtatgggggtttgggggtgaggaagttgcaggattttaatagtgctttgttaggtaaatggtgttggcggatgttggtggatagaggtg 40513247  T
Q  240 gtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtg 311  Q
    || | |||||| | ||  |||| ||  | |||||||||  || |||| ||||||||| | ||||| ||||||    
T  40513248 gtttatggtatagggtcctggtagctcggtatggtgagacggctgggcggttggaggttgggggcaggagtg 40513319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 316
Target Start/End: Complemental strand, 46190091 - 46190032
Alignment:
Q  257 ttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttct 316  Q
    ||||||||||| ||||||||||||| || | ||||||||| | |||||||||||| ||||    
T  46190091 ttggtggcgaggtatggtgaggaggctgagcggttggaggttgggggccggagtgtttct 46190032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 30166773 - 30166878
Alignment:
Q  145 aaaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctt 244  Q
    ||||||| |||| ||||| ||||| || |||||||| |  ||||||   || ||||| ||||| ||||||||||| ||||| ||||| ||||||||| |     
T  30166773 aaaggagaatggaggtttgggggtgaggcagttgaaggaatttaatagtgctttgttaggtaaatggtgttggcggatgttggttgacagaggtggtttg 30166872  T
Q  245 tggtat 250  Q
    ||||||    
T  30166873 tggtat 30166878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 11757816 - 11757856
Alignment:
Q  29 aaggatccatcaggtataatctcttccatagaatctctttt 69  Q
    |||| |||||| ||||||||||||||| |||||||||||||    
T  11757816 aaggctccatctggtataatctcttccctagaatctctttt 11757856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 14091671 - 14091711
Alignment:
Q  185 tttaatgaggcgttgttgggtaagtggtgttggcgtatgtt 225  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  14091671 tttaatgtagcgttgttgggaaagtggtgttggcgtatgtt 14091711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 209 - 357
Target Start/End: Original strand, 48569532 - 48569680
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccgga 308  Q
    |||||||||||  ||||||||||||||| |||  | |||  | | ||||||||||| || ||||||| || ||||||  | ||||||||| ||||||| |    
T  48569532 tggtgttggcggttgttagttgatagagatgggttgtggcgtagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggccgaa 48569631  T
Q  309 gtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
    |  |||||| ||||| || |||| |  | | ||||||||||||| ||||    
T  48569632 gctgttcttcgtggtagagggagatagtcaggattagagatgggatagg 48569680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 94 - 376
Target Start/End: Complemental strand, 36256538 - 36256255
Alignment:
Q  94 tgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatgag 193  Q
    ||||||| ||||||||||||||||||||| ||||  || | |  || |  |||| ||||||||||||||||| ||||| |||||||  |  |||||||||    
T  36256538 tgaggattatagaaaaatatcttgggtgggttggcagagttt--gtctgagaaatgagtatggtggtttaggagttaggcagttgagagagtttaatgag 36256441  T
Q  194 gcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttgg 293  Q
    |||||||| || ||||| |||||| |  |  | |||||| | || ||  | |||||| | |||||||| |  ||||||||||    ||||||||||||||    
T  36256440 gcgttgttagggaagtgatgttggagattacttgttgatcgtggagggttgtggtatagggtgttggttgttagatatggtgttagggatgggaggttgg 36256341  T
Q  294 aggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgg---ggtagggggcggtgttggttggttt 376  Q
    ||||| ||||||||||||||||||| |||||||| ||||||   | ||||||||| ||   ||  |||||||||||||||||||||    
T  36256340 aggatgggggccggagtggttctttttggtggaaagaggttggtaggattagagaaggggagggtgggggcggtgttggttggttt 36256255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 232 - 354
Target Start/End: Original strand, 42039221 - 42039343
Alignment:
Q  232 tagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggag 331  Q
    |||||||||  |||||||| | ||||||||||||| ||||||||||| || |||| ||||||||||| |||||||||||| || ||  ||||||| ||||    
T  42039221 tagaggtgggttttggtatagggtgttggtggcgaaatatggtgaggtggttgggcggttggaggatgggggccggagtgctttttcttggtggagggag 42039320  T
Q  332 gttatgaagattagagatggggt 354  Q
     | ||||||||||| ||||||||    
T  42039321 ttaatgaagattagggatggggt 42039343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 197 - 345
Target Start/End: Complemental strand, 476872 - 476724
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    ||||| ||||| ||||||||||| ||||| || ||||||| |||| |||||||| | ||| |||| |||||||||||||||||||  |||||||||||||    
T  476872 ttgttaggtaaatggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg 476773  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggttatgaagattag 345  Q
       |||||||||||  ||| |  ||||||||||| ||  ||||||||||    
T  476772 tagggggccggagtacttcatcttggtggaaggaagtagtgaagattag 476724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 354
Target Start/End: Complemental strand, 42259939 - 42259782
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    ||||| ||||| |||||||| || ||||| || |||||||||||  ||||||||   ||||| |||| ||||||| |||||| || |||||| |||||||    
T  42259939 ttgttaggtaaatggtgttgacggatgttggtggatagaggtgggttttggtataaggtgtttgtggagagatatcgtgaggtggctgggagtttggagg 42259840  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggt 354  Q
     | || ||||||||| |||||  ||||||| ||||||  |||||||||| ||||||||    
T  42259839 ttgggagccggagtgcttcttcttggtggagggaggtagtgaagattagggatggggt 42259782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 35983329 - 35983432
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||||||||| || |||||||||| ||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| || ||| |||||||||||||     
T  35983329 gtgttggtggctaggtatggtgaggcggatggaggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgaggattagagatggga 35983428  T
Q  354 tagg 357  Q
    ||||    
T  35983429 tagg 35983432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 42514322 - 42514219
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| ||||||||| || ||||||||| ||||||||||| |||||| |||||||| |||| || ||| |||||||||||||     
T  42514322 gtgttagtggctaggtatggtgtggaggatggcagtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgaggattagagatggga 42514223  T
Q  354 tagg 357  Q
    ||||    
T  42514222 tagg 42514219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 334
Target Start/End: Complemental strand, 27325351 - 27325286
Alignment:
Q  269 tatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggtt 334  Q
    |||||||||||| ||||||||||||||||| ||| |||||| |||||||||||||||| |||||||    
T  27325351 tatggtgaggagtatgggaggttggaggatggggaccggaggggttctttgtggtggagggaggtt 27325286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 357
Target Start/End: Original strand, 8299663 - 8299823
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    |||||||| || ||||||||| |  ||||||||||||| || ||| | |||  | | |||||| |||| || ||||| | |||||||||  | |||||||    
T  8299663 ttgttggggaaatggtgttggaggctgttagttgataggggaggtttgtggagtagggtgttgttggctaggtatggcgtggaggatggtggtttggagg 8299762  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
    || ||||||||||| ||||||||||||||| |||| || ||| ||||| ||||||| ||||    
T  8299763 atgggggccggagttgttctttgtggtggagggagattgtgaggattaaagatgggatagg 8299823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 41590707 - 41590635
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctt 317  Q
    |||||| | |||||||||||||| ||||||||||||||||||||||||| || | |||||||||| |||||||    
T  41590707 tggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggggccggagaggttctt 41590635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 330
Target Start/End: Complemental strand, 380548 - 380427
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccgga 308  Q
    ||||||||||| ||||| || ||||||| |||| | |||||| | ||| |||  ||| | |||||||||||||  ||||||||||||| | |||||||||    
T  380548 tggtgttggcggatgttggtggatagagatggtttctggtatagggtgctggaagcgcggtatggtgaggaggcagggaggttggaggttgggggccgga 380449  T
Q  309 gtggttctttgtggtggaagga 330  Q
    |||||||||  |||| ||||||    
T  380448 gtggttcttcttggtagaagga 380427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 4297838 - 4297910
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctt 317  Q
    |||||| | |||||||||||||| ||||||||||||||||||||||||| || | ||| |||||| |||||||    
T  4297838 tggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttggggcccggagaggttctt 4297910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 291 - 357
Target Start/End: Original strand, 25856999 - 25857065
Alignment:
Q  291 tggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
    |||||||| ||||||||||| ||||||||||||||| |||| || ||| ||||||||||||| ||||    
T  25856999 tggaggatgggggccggagttgttctttgtggtggagggagattgtgaggattagagatgggatagg 25857065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 353
Target Start/End: Original strand, 20208152 - 20208356
Alignment:
Q  148 ggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttgg 247  Q
    ||||| ||||||||| ||||| ||||||||||  |  || |||  ||| ||||| || |||||||||||| | ||| |||| |||||  ||||| |||||    
T  20208152 ggagtttggtggtttgggggtgagacagttgagagagttcaatttggctttgttaggaaagtggtgttggaggatgctagtagataggagtggtttttgg 20208251  T
Q  248 tatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagag 347  Q
    |||||||| || || ||  | ||||| || |  | |||||||||||||| | ||||||||||| |||| || ||||||| ||||||   | |||||||||    
T  20208252 tatcgagtcttagtcgcccg-tatggcgaagtaggtgggaggttggaggttgggggccggagttgttcgttttggtggagggaggtggggtagattagag 20208350  T
Q  348 atgggg 353  Q
    ||||||    
T  20208351 atgggg 20208356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 357
Target Start/End: Original strand, 30731858 - 30731955
Alignment:
Q  260 gtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
    ||||| || ||||||| |||||||||  | ||||||||| ||||||||||| ||||||  ||||||| |||| || ||| ||||||||||||| ||||    
T  30731858 gtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcatggtggagggagattgtgaggattagagatgggatagg 30731955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 12825786 - 12825698
Alignment:
Q  269 tatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
    ||||||| ||||||||| || ||||||||| |||| | |||| |||||| |||||||| |||| || ||| ||||||||||||| ||||    
T  12825786 tatggtgtggaggatggcagtttggaggatgggggtcagagttgttcttcgtggtggagggagattgtgaggattagagatgggatagg 12825698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 26262984 - 26263048
Alignment:
Q  269 tatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggt 333  Q
    ||||||||||||||||| ||||||| || | ||||||||||||| ||||| ||||||| ||||||    
T  26262984 tatggtgaggaggatggaaggttggtgggtgggggccggagtgggtctttttggtggagggaggt 26263048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 27116711 - 27116814
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||| | |||||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| |  ||| |||||||||||||     
T  27116711 gtgttagtggctaggtatggcgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagatcgtgaggattagagatggga 27116810  T
Q  354 tagg 357  Q
    ||||    
T  27116811 tagg 27116814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 28535213 - 28535316
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||||||||| || ||||||| || ||||||  | ||||||||| ||||||||||| ||||||  ||||||| |||| |  ||| |||||||||||||     
T  28535213 gtgttggtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcatggtggagggagatagtgaggattagagatggga 28535312  T
Q  354 tagg 357  Q
    ||||    
T  28535313 tagg 28535316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 31642113 - 31642010
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||||||||| |||||||||| || ||||||  | ||||||||| ||||||||||| ||||||  ||||||  |||| |  ||| |||||||||||||     
T  31642113 gtgttggtggctagatatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcatggtggcgggagatagtgaggattagagatggga 31642014  T
Q  354 tagg 357  Q
    ||||    
T  31642013 tagg 31642010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 18896211 - 18896109
Alignment:
Q  194 gcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttgg 293  Q
    |||||||| ||||||||||||||| |  |||| ||||||||||| ||  | |||||| |  ||||||  ||||| ||| |||||| ||||||||||||||    
T  18896211 gcgttgttaggtaagtggtgttggagattgttggttgatagaggagggttgtggtataggatgttggcagcgaggtatcgtgaggtggatgggaggttgg 18896112  T
Q  294 agg 296  Q
    |||    
T  18896111 agg 18896109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 22174305 - 22174347
Alignment:
Q  27 tcaaggatccatcaggtataatctcttccatagaatctctttt 69  Q
    |||||| |||||||||||||||||||||||| |||||||||||    
T  22174305 tcaaggttccatcaggtataatctcttccattgaatctctttt 22174347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 333
Target Start/End: Complemental strand, 6049855 - 6049744
Alignment:
Q  222 tgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtg 321  Q
    |||||||||||||  ||||  ||||||||||||| || || ||  | |||||||| |  | |||||||||||||| |||||||| |||| ||||||  ||    
T  6049855 tgttagttgataggagtggcttttggtatcgagtcttagtcgcccgttatggtgaagtaggtgggaggttggaggttaggggccagagttgttcttcctg 6049756  T
Q  322 gtggaaggaggt 333  Q
    ||||| ||||||    
T  6049755 gtggagggaggt 6049744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 255
Target Start/End: Original strand, 7000219 - 7000326
Alignment:
Q  148 ggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttgg 247  Q
    ||||| ||| ||||| ||||| ||||||||||| |  ||||||  | | ||||| ||||||||||||||| | ||| ||||||||||  ||||  |||||    
T  7000219 ggagtttggaggtttgggggtgagacagttgaaagaatttaatttgcctttgttaggtaagtggtgttggaggatgctagttgataggagtggcttttgg 7000318  T
Q  248 tatcgagt 255  Q
    ||||||||    
T  7000319 tatcgagt 7000326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 352
Target Start/End: Complemental strand, 27796131 - 27795988
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccgga 308  Q
    |||||||||||  |||||||||||||||  ||  | |||  | | ||||||||||| || ||||||| || ||||||  | ||||||||| |||||| ||    
T  27796131 tggtgttggcggttgttagttgatagagaggggttatggcgtagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggccaga 27796032  T
Q  309 gtggttctttgtggtggaaggaggttatgaagattagagatggg 352  Q
    || |||||| |||||||| ||||    | |||||||||||||||    
T  27796031 gttgttcttcgtggtggagggagtaagtcaagattagagatggg 27795988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 326
Target Start/End: Complemental strand, 42928790 - 42928661
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    |||||||| ||||||||||||||  ||||| | ||||| |  | | | |||| | | ||||||||||| || |||| || || ||||||  | |||||||    
T  42928790 ttgttgggaaagtggtgttggcgattgttaatagatagggaagctttatggtgtagggtgttggtggctaggtatgatgtggcggatggaggtttggagg 42928691  T
Q  297 ataggggccggagtggttctttgtggtgga 326  Q
    || ||||||||||| |||||| ||||||||    
T  42928690 atgggggccggagttgttcttcgtggtgga 42928661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 1821298 - 1821254
Alignment:
Q  27 tcaaggatccatcaggtataatctcttccatagaatctcttttga 71  Q
    |||||| | ||||| |||||||||||||||| |||||||||||||    
T  1821298 tcaaggtttcatcaagtataatctcttccattgaatctcttttga 1821254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 22176376 - 22176440
Alignment:
Q  266 agatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaagga 330  Q
    ||||||||||||||||  |||||||||| || | ||||||||||||  ||||  |||||||||||    
T  22176376 agatatggtgaggaggcagggaggttggcggttgggggccggagtgtctcttcttggtggaagga 22176440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 137 - 316
Target Start/End: Complemental strand, 12341286 - 12341107
Alignment:
Q  137 tgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagag 236  Q
    ||||||||||||||| |||| ||||| ||||| ||||||||||| |  ||||||  ||| ||||| || |||||||||||| | |||||||| |||||||    
T  12341286 tgtttacgaaaggagaatgggggtttgggggtgagacagttgaaggaatttaatatggctttgttaggaaagtggtgttggaggatgttagtggatagag 12341187  T
Q  237 gtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttct 316  Q
    | ||  | |||| | | ||  |||||||||| ||||||||||||| |||| ||||||||| | || ||||||||| ||||    
T  12341186 gagggttgtggtttagggtactggtggcgaggtatggtgaggaggctgggcggttggaggttgggagccggagtgtttct 12341107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 42649822 - 42649718
Alignment:
Q  253 agtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggg 352  Q
    |||||||||||| ||||||||||||||||| ||||||||| | ||| |||||||||||||||||  ||||||||| ||| || |||||||||  ||||||    
T  42649822 agtgttggtggctagatatggtgaggaggacgggaggttgaaagatgggggccggagtggttctacgtggtggaatgagattgtgaagattatggatggg 42649723  T
Q  353 gtagg 357  Q
     ||||    
T  42649722 atagg 42649718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 293
Target Start/End: Complemental strand, 12332510 - 12332411
Alignment:
Q  194 gcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttgg 293  Q
    |||||||| || || |||||||||||| | ||||| || ||  || ||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  12332510 gcgttgttaggcaaatggtgttggcgtttattagtggagaggtgtagtctttggtatagggtgttggtggcgagatatggtgaggaggatgggaggttgg 12332411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 334
Target Start/End: Original strand, 4310311 - 4310460
Alignment:
Q  185 tttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatg 284  Q
    ||||||||||||||||| || |||||||||||| |  |  | |||||| | || ||  | |||||| | |||||||| || ||||||| ||    |||||    
T  4310311 tttaatgaggcgttgttagggaagtggtgttggaggttacttgttgatcgtggagggttgtggtatagggtgttggttgctagatatgatgttagggatg 4310410  T
Q  285 ggaggttggaggataggggccggagtggttctttgtggtggaaggaggtt 334  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  4310411 ggaggttggaggatgggggccggagtggttctttttggtggaaggaggtt 4310460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 197 - 357
Target Start/End: Complemental strand, 20824958 - 20824798
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    |||||||| || ||||||||| |  ||||||||||||| || ||| | |||  | | |||||| |||| || ||||| | |||||||||  | |||||||    
T  20824958 ttgttggggaaatggtgttggaggctgttagttgataggggaggtttgtggagtagggtgttgttggctaggtatggcgtggaggatggtggtttggagg 20824859  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
    || ||||||||||| ||||||||||||||| |||| || ||| ||||||||||||| ||||    
T  20824858 atgggggccggagttgttctttgtggtggagggagattgtgaggattagagatgggatagg 20824798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 209 - 317
Target Start/End: Complemental strand, 36493028 - 36492920
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccgga 308  Q
    |||||||||||| |||| ||||| ||  || || | |||||| | |||||||||||||| ||||||||||||||||||||||||| || | |||||||||    
T  36493028 tggtgttggcgtttgttggttgagaggagtagtttatggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttgggggccgga 36492929  T
Q  309 gtggttctt 317  Q
    | |||||||    
T  36492928 gaggttctt 36492920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 250
Target Start/End: Complemental strand, 7453116 - 7452958
Alignment:
Q  92 agtgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatg 191  Q
    |||||||||||||||||||| || ||| | | |||||  ||| | |||| |  |||||||||||| ||||| ||||| |||||||||||||  ||||||     
T  7453116 agtgaggatcatagaaaaatttcctggataggttggaaaactgtttgttcaaaaaaggagtatggaggtttgggggtgagacagttgaatgaatttaata 7453017  T
Q  192 aggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtat 250  Q
      || ||||| ||||||||||||||||| ||||| || || ||||||||| | ||||||    
T  7453016 gtgctttgttaggtaagtggtgttggcggatgttggtggacagaggtggtttgtggtat 7452958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 352
Target Start/End: Original strand, 29721388 - 29721546
Alignment:
Q  194 gcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttgg 293  Q
    |||||||| || || ||||||||| | ||||||||||||  ||||||  | |||||| | || ||||||||||||||||||||||||  |||||||||||    
T  29721388 gcgttgttaggcaaatggtgttggaggatgttagttgatcaaggtgggttgtggtatagggttttggtggcgagatatggtgaggagcctgggaggttgg 29721487  T
Q  294 aggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggg 352  Q
    |||   ||||||||||||  ||||  ||||||| |||| |   ||||||||| ||||||    
T  29721488 aggtagggggccggagtgtctcttattggtggagggagatagcgaagattagggatggg 29721546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 311
Target Start/End: Complemental strand, 36025168 - 36025066
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccgga 308  Q
    ||||||||||| ||||| || |||||||| ||  | |||||| |||| ||||||||||||||||||||||||| |||| ||||||||| | ||| |||||    
T  36025168 tggtgttggcggatgttggtggatagaggagggttatggtatagagttttggtggcgagatatggtgaggaggctgggcggttggaggttggggaccgga 36025069  T
Q  309 gtg 311  Q
    |||    
T  36025068 gtg 36025066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 7924988 - 7924890
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggg 352  Q
    ||||| ||||| || ||||||| |||||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| || ||| |||||||||||||    
T  7924988 gtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgaggattagagatggg 7924890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 206 - 316
Target Start/End: Original strand, 37165611 - 37165721
Alignment:
Q  206 aagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggcc 305  Q
    ||||| |||||| | |||||||| |||||||| ||  | |||||| | ||  |||||||||||||||| |||||||||||| ||||||||| | ||||||    
T  37165611 aagtgatgttggaggatgttagtggatagaggaggcttgtggtatagggtactggtggcgagatatggcgaggaggatgggcggttggaggttgggggcc 37165710  T
Q  306 ggagtggttct 316  Q
    |||||| ||||    
T  37165711 ggagtgtttct 37165721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 334
Target Start/End: Complemental strand, 18187805 - 18187668
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    ||||| ||||| ||||||||| |  ||||||| |||||||||||| | |||||| | | | |||| |   |||||||||||||||  ||| ||||||  |    
T  18187805 ttgttaggtaaatggtgttggagattgttagtagatagaggtggtttgtggtatagggagctggttgattgatatggtgaggaggtagggcggttggcag 18187706  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggtt 334  Q
     |  ||||||||||||||||||||||||||||||||||    
T  18187705 ttgagggccggagtggttctttgtggtggaaggaggtt 18187668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 333
Target Start/End: Complemental strand, 17659502 - 17659354
Alignment:
Q  185 tttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatg 284  Q
    ||||||| ||| ||||| ||||||||||||||| | ||| ||||||||||  ||||  ||||||||||||| || || ||  | ||||| || |  | ||    
T  17659502 tttaatgtggctttgttaggtaagtggtgttggaggatgctagttgataggagtggcttttggtatcgagtcttagtcgcccgttatggcgaagtaggtg 17659403  T
Q  285 ggaggttggaggataggggccggagtggttctttgtggtggaaggaggt 333  Q
    |||||||||||| | ||||||||||| ||||||  ||||||| ||||||    
T  17659402 ggaggttggaggttgggggccggagttgttcttcttggtggagggaggt 17659354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 357
Target Start/End: Complemental strand, 25193699 - 25193587
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagatta 344  Q
    |||||||| |||||||||| | | ||||||||||||| ||||||||||||||   |||||||||||| |||||  ||||||| |||| |   ||||||||    
T  25193699 tggtatcgggtgttggtggtgcggtatggtgaggaggctgggaggttggaggtagggggccggagtgattcttattggtggagggagatagcgaagatta 25193600  T
Q  345 gagatggggtagg 357  Q
    | |||||| ||||    
T  25193599 gggatgggatagg 25193587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 172577 - 172680
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| |||||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| |  ||| |||||||||||||     
T  172577 gtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagatcgtgaggattagagatggga 172676  T
Q  354 tagg 357  Q
    ||||    
T  172677 tagg 172680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 8300405 - 8300302
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| |||||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| |  ||| |||||||||||||     
T  8300405 gtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagatcgtgaggattagagatggga 8300306  T
Q  354 tagg 357  Q
    ||||    
T  8300305 tagg 8300302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 353
Target Start/End: Complemental strand, 36157863 - 36157657
Alignment:
Q  146 aaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtcttt 245  Q
    ||||||| ||| ||||| ||||| ||||||||||| |  |||||| |||| ||||| || |||||||||||| | ||| | ||||||||  ||||| | |    
T  36157863 aaggagtttggaggtttgggggtgagacagttgaaggagtttaatcaggctttgttaggaaagtggtgttggaggatgcttgttgataggagtggtttgt 36157764  T
Q  246 ggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattag 345  Q
    ||||| |||| || || ||  | ||||| || |  | |||||||||||||| | ||||||||||| ||||||  ||||||| ||||||   || ||||||    
T  36157763 ggtattgagttttagtcgcccg-tatggcgaagtaggtgggaggttggaggttgggggccggagttgttcttcttggtggagggaggtggcgaggattag 36157665  T
Q  346 agatgggg 353  Q
    ||||||||    
T  36157664 agatgggg 36157657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 357
Target Start/End: Original strand, 13878980 - 13879128
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccgga 308  Q
    |||||||||||  |||||||||||||||  ||  | |||  | | ||||||||||| || ||||||| || ||||||  | ||||||||| |||||| ||    
T  13878980 tggtgttggcggttgttagttgatagagaggggttatggcgtagggtgttggtggctaggtatggtgtggcggatggtggtttggaggatgggggccaga 13879079  T
Q  309 gtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
    || |||||| |||||||| |||| |  | ||||||||||||||| ||||    
T  13879080 gttgttcttcgtggtggagggagatagtcaagattagagatgggatagg 13879128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 345
Target Start/End: Complemental strand, 5585323 - 5585200
Alignment:
Q  222 tgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtg 321  Q
    ||||||| ||||||||| |||| | |||| | |||||| || |  ||||||||| || | |||| |||||||||||| ||||||||||| ||||  ||||    
T  5585323 tgttagtcgatagaggtagtctgttgtatagggtgttgttgacacgatatggtgcggtgcatggtaggttggaggatgggggccggagttgttccatgtg 5585224  T
Q  322 gtggaaggaggttatgaagattag 345  Q
    |||||| ||| |  ||||||||||    
T  5585223 gtggaaagagatagtgaagattag 5585200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 9923203 - 9923100
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||||||||| || ||||||| || ||||||  | ||||||||| ||||||||||| ||||||  ||||||| |||| |  ||| |||||||||||||     
T  9923203 gtgttggtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcatggtggagggagatagtgaggattagagatggga 9923104  T
Q  354 tagg 357  Q
    ||||    
T  9923103 tagg 9923100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 331
Target Start/End: Complemental strand, 38046945 - 38046883
Alignment:
Q  269 tatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggag 331  Q
    ||||||| |||||||||||||||||||||| ||||||| ||| |||||| ||| |||| ||||    
T  38046945 tatggtgtggaggatgggaggttggaggatgggggccgaagttgttcttcgtgatggagggag 38046883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 41664906 - 41665004
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggg 352  Q
    ||||| ||||| || ||||||| || ||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| |  ||| |||||||||||||    
T  41664906 gtgttagtggctaggtatggtgtggcggatggaggtttggaggatgggggccggagttgttcttcgtggtggatggagatagtgaggattagagatggg 41665004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 8902474 - 8902398
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgg 285  Q
    ||||||||||| |||||||||||||||| |||  | |||||| | ||||| |||||  | |||||||||||||||||    
T  8902474 tggtgttggcggatgttagttgatagagctggcttgtggtatagggtgttagtggctcgttatggtgaggaggatgg 8902398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 12134898 - 12134850
Alignment:
Q  285 ggaggttggaggataggggccggagtggttctttgtggtggaaggaggt 333  Q
    |||||||||||| | ||||||||||||||||||| |||||| |||||||    
T  12134898 ggaggttggaggttgggggccggagtggttctttatggtggcaggaggt 12134850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 333
Target Start/End: Original strand, 28992782 - 28992846
Alignment:
Q  269 tatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggt 333  Q
    |||||||||||||||| ||||||| ||| | |||||| ||||| ||||| |||||||| ||||||    
T  28992782 tatggtgaggaggatgagaggttgaaggttgggggccagagtgtttcttcgtggtggagggaggt 28992846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 352
Target Start/End: Original strand, 3544582 - 3544737
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    ||||| ||||| ||||||||||| ||||| || ||||||| |||| |||||||| | ||| |||| |||||||||||||||||||  |||||||||||||    
T  3544582 ttgttaggtaaatggtgttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggagg 3544681  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggg 352  Q
       |||||||||||  ||| |  ||||||||||| ||  |||||||||| ||||||    
T  3544682 tagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 3544737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 203 - 354
Target Start/End: Original strand, 19014471 - 19014621
Alignment:
Q  203 ggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggg 302  Q
    ||||| ||| ||||||| ||||| || || ||||||||  ||||||||  ||||||||||||||||||||||||||||   ||||||||||||| | |||    
T  19014471 ggtaaatggagttggcggatgttggtggacagaggtgggttttggtattaagtgttggtggcgagatatggtgaggagacagggaggttggagg-ttggg 19014569  T
Q  303 gccggagtggttctttgtggtggaaggaggttatgaagattagagatggggt 354  Q
    ||||||||| |||||  ||||||| |||| |  |||||||||| ||||||||    
T  19014570 gccggagtgtttcttcttggtggagggagatagtgaagattagggatggggt 19014621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 198 - 333
Target Start/End: Original strand, 22191264 - 22191399
Alignment:
Q  198 tgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagga 297  Q
    |||| ||||| ||||||||| |  | ||||||||||  ||| || | |||||| | |||||||||||| | ||||||||||||||||||||||||| ||     
T  22191264 tgttaggtaaatggtgttggaggttattagttgataagggtagtatgtggtatagggtgttggtggcgtgttatggtgaggaggatgggaggttggtggt 22191363  T
Q  298 taggggccggagtggttctttgtggtggaaggaggt 333  Q
    | |||||||||||| ||||| |||||||||||||||    
T  22191364 tgggggccggagtgtttcttcgtggtggaaggaggt 22191399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 137 - 354
Target Start/End: Original strand, 1248007 - 1248223
Alignment:
Q  137 tgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagag 236  Q
    ||||||| |||||||||||| || |||||||| || ||||| |  |  ||||||   || ||||| ||||| | ||||||| |||| || || |||| ||    
T  1248007 tgtttacaaaaggagtatggggggttaggggtgaggcagttaagggagtttaatagtgctttgttaggtaaatagtgttggtgtatattggtggataaag 1248106  T
Q  237 gtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttat 336  Q
    ||||| |||||||| |  |||||||||||||||||||||||||||  ||||||||||||| ||||||| |||||  ||| |  ||||||| ||| ||  |    
T  1248107 gtggtttttggtataggctgttggtggcgagatatggtgaggaggtagggaggttggagg-taggggctggagtacttcatcttggtggagggaagtagt 1248205  T
Q  337 gaagattagagatggggt 354  Q
    ||||||||| ||||||||    
T  1248206 gaagattagggatggggt 1248223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 28358545 - 28358435
Alignment:
Q  201 tgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggatag 300  Q
    ||||||| ||||||||| |  |||| || |||||||| ||  |||||||  | ||||||||||||||||||||||||||||  ||||||||||||| | |    
T  28358545 tgggtaaatggtgttggagattgttggtagatagaggcgggttttggtacagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgg 28358446  T
Q  301 gggccggagtg 311  Q
    |||||||||||    
T  28358445 gggccggagtg 28358435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 314
Target Start/End: Complemental strand, 45270840 - 45270783
Alignment:
Q  257 ttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggtt 314  Q
    |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||    
T  45270840 ttggtggcgagatatgatgaggaggatgggaggttggaggttgggggccggagtggtt 45270783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 333
Target Start/End: Complemental strand, 3074356 - 3074268
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggt 333  Q
    |||||| | |||||||| ||| | ||||||||||||||||||||||||| || | ||| |||||||| ||||| |||||||||||||||    
T  3074356 tggtatagggtgttggtagcgcgttatggtgaggaggatgggaggttggcggttggggaccggagtgtttcttcgtggtggaaggaggt 3074268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 6051205 - 6051102
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| |||||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| || ||| |||||||||||||     
T  6051205 gtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgaggattagagatggga 6051106  T
Q  354 tagg 357  Q
    ||||    
T  6051105 tagg 6051102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 333
Target Start/End: Complemental strand, 21405469 - 21405360
Alignment:
Q  224 ttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggt 323  Q
    ||||||||||  ||| || | |||||| | |||||||| ||  | ||||||||||||||||||||||||| || | |||||| ||||| ||||| |||||    
T  21405469 ttagttgataagggtagtatgtggtatagggtgttggtagcacgttatggtgaggaggatgggaggttggtggttgggggccagagtgtttcttcgtggt 21405370  T
Q  324 ggaaggaggt 333  Q
    ||||||||||    
T  21405369 ggaaggaggt 21405360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 353
Target Start/End: Original strand, 25504370 - 25504631
Alignment:
Q  92 agtgaggatcatagaaaaatatcttgggtggattggaggactatctgtttacgaaaggagtatggtggtttaggggttagacagttgaatgtttttaatg 191  Q
    |||||||||||||| |||||||||||| | | ||||||  || | ||| | |  ||||||| ||| || |||||||||||||||||||  |  ||||||     
T  25504370 agtgaggatcataggaaaatatcttggataggttggagctctgtttgtctccagaaggagtttggagggttaggggttagacagttgatggagtttaata 25504469  T
Q  192 aggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggtt 291  Q
      || ||  | || || ||||||||| | |||||||| ||||| |||||| |||||||| |||| || || ||  | ||||| |||| |  |||||||||    
T  25504470 ttgccttactagggaaatggtgttggaggatgttagtggataggggtggtttttggtatagagttttagtcgcccgttatggcgaggtgtgtgggaggtt 25504569  T
Q  292 ggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| | |||||| |||| ||||||  ||||||  |||||||  ||||||||| |||||||    
T  25504570 ggaggttgggggccagagttgttcttcttggtggcgggaggttgggaagattagggatgggg 25504631  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 50817391 - 50817467
Alignment:
Q  155 ggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttga 231  Q
    ||||||||||| |||||| | ||||  |  ||||||| |||||| ||||| ||||||||||||||||||||||||||    
T  50817391 ggtggtttaggcgttagaaaattgagggaatttaatgtggcgttattggggaagtggtgttggcgtatgttagttga 50817467  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 146 - 333
Target Start/End: Original strand, 28097396 - 28097582
Alignment:
Q  146 aaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtcttt 245  Q
    ||||||| ||| ||||| ||||| ||||||||||| |  |||||| |||| ||||| || |||||||||||| ||||| | ||||||||  ||| | | |    
T  28097396 aaggagtttggaggtttgggggtgagacagttgaaggagtttaatcaggctttgttaggaaagtggtgttggagtatgcttgttgatagtagtgatttgt 28097495  T
Q  246 ggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggt 333  Q
    |||||||||| || || ||  | ||||| || |  | |||||||||||||| | |||||||||||  |||||  ||||||| ||||||    
T  28097496 ggtatcgagttttagtcgcccgttatggcgaagtaggtgggaggttggagg-ttggggccggagttattcttcttggtggagggaggt 28097582  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 316
Target Start/End: Complemental strand, 38070479 - 38070372
Alignment:
Q  209 tggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccgga 308  Q
    |||||||||||  |||| || |||||||| ||  | |||||| |||| |||||||| || ||||||||||||| |||| ||||||||| | |||| ||||    
T  38070479 tggtgttggcggttgttggtggatagaggagggttgtggtatagagttttggtggcaaggtatggtgaggaggctgggcggttggaggttgggggtcgga 38070380  T
Q  309 gtggttct 316  Q
    ||| ||||    
T  38070379 gtgtttct 38070372  T

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Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 352
Target Start/End: Original strand, 47622615 - 47622713
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggg 352  Q
    ||||||||||| || ||||||| || ||||||  | ||||||||||||||||||||| ||||||  |||||||  ||| |  ||| |||||||||||||    
T  47622615 gtgttggtggctaggtatggtgtggtggatggaggtttggaggataggggccggagttgttcttcttggtggagagagatagtgaggattagagatggg 47622713  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 43943960 - 43944012
Alignment:
Q  198 tgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtat 250  Q
    |||||||||||||||||||| | |||||||||||||||| |||| | ||||||    
T  43943960 tgttgggtaagtggtgttggaggatgttagttgatagagatggtttgtggtat 43944012  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 357
Target Start/End: Complemental strand, 35541614 - 35541548
Alignment:
Q  291 tggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
    |||||||| ||||||||||| |||||| |||||||| |||| |  ||| ||||||||||||| ||||    
T  35541614 tggaggatgggggccggagttgttcttcgtggtggagggagatcgtgaggattagagatgggatagg 35541548  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 5809168 - 5809080
Alignment:
Q  269 tatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggggtagg 357  Q
    ||||||| | ||| |||||||||||||| | |||||||||||| ||| |  | |||| |||| ||  |||||||||| |||||||||||    
T  5809168 tatggtgtgaaggttgggaggttggaggttgggggccggagtgtttcatcttagtggcaggaagtagtgaagattagggatggggtagg 5809080  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 325
Target Start/End: Original strand, 13867314 - 13867442
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    ||||| ||||| ||||||||||| ||||| || |||||||||||| | |||||| | ||  |||| ||  | |||||||||  || |||| |||||||||    
T  13867314 ttgttaggtaaatggtgttggcggatgttggtggatagaggtggtttatggtatagggtcctggtagctcggtatggtgagacggctgggcggttggagg 13867413  T
Q  297 ataggggccggagtggttctttgtggtgg 325  Q
     | ||||| |||||| ||| | |||||||    
T  13867414 ttgggggcaggagtgtttcatcgtggtgg 13867442  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 39430850 - 39430782
Alignment:
Q  283 tgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgg 351  Q
    |||||||||||||| | ||||||||||| ||||||  ||||||| ||||||   || ||||||||||||    
T  39430850 tgggaggttggaggttgggggccggagttgttcttattggtggagggaggtggggaggattagagatgg 39430782  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 52692082 - 52692034
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttgg 293  Q
    |||||| | |||||||||||| | ||||||||||||| |||||||||||    
T  52692082 tggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttgg 52692034  T

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Target: scaffold0024 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 357
Target Start/End: Original strand, 86730 - 86842
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagatta 344  Q
    ||||||||||||||||| || |||||||||||||||  |||||||||||||||| |||| | |||||||| |   ||||||||||||||| |||| ||||    
T  86730 tggtatcgagtgttggttgctagatatggtgaggagtgtgggaggttggaggatgggggtcagagtggttgtaattggtggaaggaggttgtgaaaatta 86829  T
Q  345 gagatggggtagg 357  Q
    | |||||| ||||    
T  86830 gggatgggatagg 86842  T

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Target: scaffold0043 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 352
Target Start/End: Original strand, 34090 - 34245
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggagg 296  Q
    ||||| |||||  |||||||||| ||||| || || |||| |||| |||||||| | ||| |||| ||||||||||||||||||   |||||||||||||    
T  34090 ttgttaggtaaaaggtgttggcgaatgttggtagagagagatggtttttggtatagggtgctggtagcgagatatggtgaggagacagggaggttggagg 34189  T
Q  297 ataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatggg 352  Q
       |||||||||||  ||| |  ||||||||||| ||  |||||||||| ||||||    
T  34190 tagggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 34245  T

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Target: scaffold0034 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 357
Target Start/End: Original strand, 105381 - 105484
Alignment:
Q  254 gtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtggttctttgtggtggaaggaggttatgaagattagagatgggg 353  Q
    ||||| ||||| || ||||||| |||||||||  | ||||||||| ||||||||||| |||||| |||||||| |||| || ||| |||||||||||||     
T  105381 gtgttagtggctaggtatggtgtggaggatggcggtttggaggatgggggccggagttgttcttcgtggtggagggagattgtgaggattagagatggga 105480  T
Q  354 tagg 357  Q
    ||||    
T  105481 tagg 105484  T

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Target: scaffold0061 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Complemental strand, 55273 - 55207
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtg 311  Q
    |||||| | |||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||    
T  55273 tggtatagggtgttggtggcgagatatggcgaggaggatgagaggttggaggttgggggccggagtg 55207  T

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Target: scaffold0017 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 143361 - 143427
Alignment:
Q  245 tggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtg 311  Q
    |||||| | |||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||    
T  143361 tggtatagggtgttggtggcgagatatggcgaggaggatgagaggttggaggttgggggccggagtg 143427  T

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Target: scaffold0016 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 28445 - 28337
Alignment:
Q  185 tttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctttggtatcgagtgttggtggcgagatatggtgaggaggatg 284  Q
    |||||||  |||||||| || || |||||||||||| |||| || || ||  || || | |||||| | ||||||||||| |||||||| ||||||||||    
T  28445 tttaatgctgcgttgttaggcaaatggtgttggcgtttgttggtggagaggagtagtttgtggtatagggtgttggtggcaagatatggcgaggaggatg 28346  T
Q  285 ggaggttgg 293  Q
    |||||||||    
T  28345 ggaggttgg 28337  T

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Target: scaffold0048 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 293
Target Start/End: Original strand, 63826 - 63876
Alignment:
Q  243 tttggtatcgagtgttggtggcgagatatggtgaggaggatgggaggttgg 293  Q
    |||||||| ||||||||||||||||||||| ||||||||  ||||||||||    
T  63826 tttggtatagagtgttggtggcgagatatgatgaggaggcagggaggttgg 63876  T

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Target: scaffold0189 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 6684 - 6633
Alignment:
Q  260 gtggcgagatatggtgaggaggatgggaggttggaggataggggccggagtg 311  Q
    ||||||||||||||||||||||  ||||||||||||| | ||||| ||||||    
T  6684 gtggcgagatatggtgaggaggcagggaggttggaggttgggggctggagtg 6633  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 250
Target Start/End: Original strand, 327563 - 327669
Alignment:
Q  144 gaaaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtct 243  Q
    ||||||||||||| ||||| ||||| ||||||||||| |  ||||||   || ||||| || || ||||||||||| ||||| || ||||||| |||| |    
T  327563 gaaaggagtatggaggtttgggggtgagacagttgaaggagtttaatagtgctttgttagggaaatggtgttggcggatgttggtggatagagatggttt 327662  T
Q  244 ttggtat 250  Q
     ||||||    
T  327663 gtggtat 327669  T

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Target: scaffold1809 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 1111 - 1160
Alignment:
Q  27 tcaaggatccatcaggtataatctcttccatagaatctcttttgattaaa 76  Q
    |||||| ||||||||||||||||||||| ||| ||| |||||||| ||||    
T  1111 tcaaggctccatcaggtataatctcttctatataatatcttttgagtaaa 1160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 8315 - 8210
Alignment:
Q  145 aaaggagtatggtggtttaggggttagacagttgaatgtttttaatgaggcgttgttgggtaagtggtgttggcgtatgttagttgatagaggtggtctt 244  Q
    ||||||| |||| ||||| ||||| ||||||||||| |  ||||||   || ||||| ||||| ||||||||||| ||||| || || ||||||||| |     
T  8315 aaaggagaatggaggtttgggggtgagacagttgaaggaatttaatagtgctttgttaggtaaatggtgttggcggatgttggtggacagaggtggtttg 8216  T
Q  245 tggtat 250  Q
    ||||||    
T  8215 tggtat 8210  T

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Target: scaffold0533 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 603 - 567
Alignment:
Q  197 ttgttgggtaagtggtgttggcgtatgttagttgata 233  Q
    |||||||| |||||||||||||||||||| |||||||    
T  603 ttgttggggaagtggtgttggcgtatgttggttgata 567  T

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Target: scaffold0026 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 67667 - 67619
Alignment:
Q  269 tatggtgaggaggatgggaggttggaggataggggccggagtggttctt 317  Q
    |||||||||||||  ||||||||||||| | ||||| ||||||||||||    
T  67667 tatggtgaggaggcagggaggttggaggttgggggctggagtggttctt 67619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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