View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21328_high_20 (Length: 300)
Name: NF21328_high_20
Description: NF21328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21328_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 35 - 280
Target Start/End: Original strand, 9579783 - 9580028
Alignment:
| Q |
35 |
gtgcgtgggtggaatacgattttgcattacctgccatacaaacacggacaccttcgacggaataattttattccgaagnnnnnnnatcggaaactcctca |
134 |
Q |
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| T |
9579783 |
gtgcttgggtggaatacgattttgcattacctgccatacaaacacggacaccttcgacagaataattttattccgaagtttttttatcggaaactcctca |
9579882 |
T |
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| Q |
135 |
tcaccaacactctcgacgtttagaacattataatctgacttgacagaatacatattcgaattctcctcttcccatgctatcatatccctactcctttccc |
234 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
9579883 |
tcaccaacactctcgccgtttagaacattataagctgacttgacagaatatatattcgaattatcctcttcccatgctatcatatccctactcccttccc |
9579982 |
T |
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| Q |
235 |
tccaacattgtgttcaacatgtctccttcccaaccatatagctctc |
280 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9579983 |
tccaacattgtgttcaacatgtctccttcccgaccatatagctctc |
9580028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 9585343 - 9585468
Alignment:
| Q |
44 |
tggaatacgattttgcattacctgccatacaaacacggacaccttcgacggaataattttattccgaag--nnnnnnnatcggaaactcctcatcaccaa |
141 |
Q |
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| T |
9585343 |
tggaatacaattttgcattacctaccatacaaacacggacaccttcgacataataattttattccaaagtatttttgtatcggaaactccccatcaccaa |
9585442 |
T |
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| Q |
142 |
cactctcgacgtttagaacattataa |
167 |
Q |
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| T |
9585443 |
cactctcgccatttagaacattataa |
9585468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 32718455 - 32718392
Alignment:
| Q |
44 |
tggaatacgattttgcattacctgccatacaaacacggacaccttcgacggaataattttattc |
107 |
Q |
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| T |
32718455 |
tggaatacgattttgcattacctgccatacaaacacaaacaccttcgacggaataattttattc |
32718392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 9585515 - 9585562
Alignment:
| Q |
233 |
cctccaacattgtgttcaacatgtctccttcccaaccatatagctctc |
280 |
Q |
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| T |
9585515 |
cctccaatattgtgttcagcgtgtctccttcccaaccatatagctctc |
9585562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 32718340 - 32718297
Alignment:
| Q |
233 |
cctccaacattgtgttcaacatgtctccttcccaaccatatagc |
276 |
Q |
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| T |
32718340 |
cctccaacattgtgttcaacatgtctccatcccaactatatagc |
32718297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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