View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21328_high_4 (Length: 357)
Name: NF21328_high_4
Description: NF21328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21328_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 15 - 329
Target Start/End: Original strand, 11641802 - 11642116
Alignment:
| Q |
15 |
gatggaaggatgaagacttgtcgtatgcatgaccttctaagagaaattgttaatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaag |
114 |
Q |
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| T |
11641802 |
gatggaaggatgaagacttgtcgtatgcatgaccttctaagagaaattgttaatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaag |
11641901 |
T |
|
| Q |
115 |
atatggtatggccggaacgagttcgtcgtttatcggtcataaattcatcacataatatacttaaacagaataagaccatattcaaacttaggtctctgct |
214 |
Q |
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| T |
11641902 |
atatggtatggccggaacgagttcgtcgtttatcggtcataaattcatcacataatgtacttaaacagaataagaccatattcaaacttaggtctctgct |
11642001 |
T |
|
| Q |
215 |
aatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatgctcctccactggtgttaagttgctcaatgtactagacttgcaggatgca |
314 |
Q |
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| T |
11642002 |
aatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatgctcctccactggtgttaagttgctcaatgtactagacttgcaggatgca |
11642101 |
T |
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| Q |
315 |
cctttggaggatttt |
329 |
Q |
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||||||||||||||| |
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| T |
11642102 |
cctttggaggatttt |
11642116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 329
Target Start/End: Original strand, 11623296 - 11623610
Alignment:
| Q |
15 |
gatggaaggatgaagacttgtcgtatgcatgaccttctaagagaaattgttaatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaag |
114 |
Q |
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| T |
11623296 |
gatggaaggataaagacttgtcgaatgcatgaccttctaagagaaattgttaatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaag |
11623395 |
T |
|
| Q |
115 |
atatggtatggccggaacgagttcgtcgtttatcggtcataaattcatcacataatatacttaaacagaataagaccatattcaaacttaggtctctgct |
214 |
Q |
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| T |
11623396 |
atatggtatggccggaacgagttcgtcgtttatcagtcataaattcgtcacataatgtacataaacagaacaagaccatattcaaacttaggtctctgct |
11623495 |
T |
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| Q |
215 |
aatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatgctcctccactggtgttaagttgctcaatgtactagacttgcaggatgca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11623496 |
aatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatgctcctccactggtgttaagttgctcaatgtactagacttgcaggatgca |
11623595 |
T |
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| Q |
315 |
cctttggaggatttt |
329 |
Q |
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||||||||||||||| |
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| T |
11623596 |
cctttggaggatttt |
11623610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 15 - 329
Target Start/End: Complemental strand, 11604153 - 11603839
Alignment:
| Q |
15 |
gatggaaggatgaagacttgtcgtatgcatgaccttctaagagaaattgttaatttcaagtcaagggatcagaactttgcaacagtagccaaagaacaag |
114 |
Q |
| |
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||||||||||||||||| ||||| ||||| | |||||||| ||||||||||||| |||||||| |||||||||||||||||| ||| |||||||||| |
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| T |
11604153 |
gatggaaggatgaagacgtgtcgaatgcacggtcttctaagggaaattgttaattctaagtcaagagatcagaactttgcaacaatagttaaagaacaag |
11604054 |
T |
|
| Q |
115 |
atatggtatggccggaacgagttcgtcgtttatcggtcataaattcatcacataatatacttaaacagaataagaccatattcaaacttaggtctctgct |
214 |
Q |
| |
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||||||||||||| || |||||||| |||||||||||||||||| | || |||||| || | |||| |||| ||| | ||| | |||||||||||||| |
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| T |
11604053 |
atatggtatggcctgagcgagttcgacgtttatcggtcataaatccttcgcataatgtattacaacaaaatacgactacatttcatcttaggtctctgct |
11603954 |
T |
|
| Q |
215 |
aatgtttgcaatatcagattcagtcaatcatttttctatccatgaattatgctcctccactggtgttaagttgctcaatgtactagacttgcaggatgca |
314 |
Q |
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|||||||| | ||||||||| | ||||||| |||||| | ||||||||||||||||||| ||||||| | || ||||||||||||||||||||||||||| |
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| T |
11603953 |
aatgtttggattatcagatttactcaatcagttttctcttcatgaattatgctcctccaatggtgttcaatttctcaatgtactagacttgcaggatgca |
11603854 |
T |
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| Q |
315 |
cctttggaggatttt |
329 |
Q |
| |
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|||||||| |||||| |
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| T |
11603853 |
cctttggatgatttt |
11603839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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