View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21328_high_6 (Length: 350)
Name: NF21328_high_6
Description: NF21328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21328_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 23 - 325
Target Start/End: Original strand, 43065431 - 43065732
Alignment:
| Q |
23 |
atcatcatcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttctattcatgcacgtgttta |
122 |
Q |
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| T |
43065431 |
atcatcatcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttcgattcatgcacatgttta |
43065530 |
T |
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| Q |
123 |
atcgcaattctgaatcctatcgnnnnnnnatttatgaatcgctagttttaaaatagtcgatggttctgtgttctcatatatacttcattcttgcatttta |
222 |
Q |
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| T |
43065531 |
atcgcaattctgaatcctatcgtttttttatttatgaatcgctagttttaaaatagttgatggttctgtgttctcatatatacttcattcttgcatttta |
43065630 |
T |
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| Q |
223 |
acattaccatgccattattatattatcgtaatgnnnnnnnnnagttgttattattacatacttgtttgtttggtattcaattatttggcttggattctgt |
322 |
Q |
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| T |
43065631 |
acattaccatgccattattatattatcgtaatg-ttttttttagttgttattattacatacttgtttgtttggtattcaattatttggcttggattctgt |
43065729 |
T |
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| Q |
323 |
ata |
325 |
Q |
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||| |
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| T |
43065730 |
ata |
43065732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 43047482 - 43047402
Alignment:
| Q |
24 |
tcatcatcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttc |
104 |
Q |
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| T |
43047482 |
tcataatcaattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttc |
43047402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 43047289 - 43047239
Alignment:
| Q |
195 |
ctcatatatacttcattcttgcattttaacattaccatgccattattatat |
245 |
Q |
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|||||| || |||||||| |||||||||||||||||||||||||||||||| |
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| T |
43047289 |
ctcatacattcttcattcatgcattttaacattaccatgccattattatat |
43047239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 42159107 - 42159055
Alignment:
| Q |
47 |
tattcgtgttgtttactttacatctgcgattgattacattataatgcttttgt |
99 |
Q |
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||||||||| |||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
42159107 |
tattcgtgtactttactttacatctttgatcgattacataataatgcttttgt |
42159055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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