View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21328_high_7 (Length: 347)
Name: NF21328_high_7
Description: NF21328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21328_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 319
Target Start/End: Complemental strand, 28243130 - 28242801
Alignment:
| Q |
14 |
tgaagcatgtaaatactaggatgaaatatgaaagaaacttacaagattaaaaaagtcaaccagaggttagagttagtacctaacaaatttagagcacaag |
113 |
Q |
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| T |
28243130 |
tgaagcatgtaaatactaggatgaaatatgaaagaaacttacaagattaaaaaagtcaaccagaggttagaatcggtacctaacaaatttagagcacaag |
28243031 |
T |
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| Q |
114 |
a----------------------agagtataaataacccgtacaagctggaataaaaactccaaacttgcatacacaaaaac--gagagaaaaaaccact |
189 |
Q |
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| T |
28243030 |
ataatatggagctactcactgcaagagtataaataacccgtacaagctggaataaaaactccaaacttgcatacacaaaaacaggggagaaaaaaccact |
28242931 |
T |
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| Q |
190 |
accaaggcaagagcaaatccaaaagtttctttctactcactcacgtgatatgcatgctcctttgcaaaaggcttgacccctaatttgggaactgatcggg |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28242930 |
accaaggcaagagcaaatccaaaagtttctttctactcactcacgtgatatgcatgctcctttgcaaaaggcttgacccctaatttgggaactgatcggg |
28242831 |
T |
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| Q |
290 |
gcatagcatagacatggtgaccttatgttt |
319 |
Q |
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||||| |||||||||||||||||||||||| |
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| T |
28242830 |
gcatatcatagacatggtgaccttatgttt |
28242801 |
T |
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