View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21328_low_1 (Length: 465)

Name: NF21328_low_1
Description: NF21328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21328_low_1
NF21328_low_1
[»] chr5 (15 HSPs)
chr5 (19-401)||(39726364-39726746)
chr5 (19-401)||(38987651-38988027)
chr5 (26-401)||(39879760-39880135)
chr5 (23-400)||(40418230-40418601)
chr5 (98-400)||(39168793-39169098)
chr5 (263-400)||(3299480-3299620)
chr5 (263-400)||(3392373-3392513)
chr5 (256-397)||(39399809-39399950)
chr5 (83-220)||(3299639-3299779)
chr5 (83-220)||(3392532-3392672)
chr5 (256-400)||(1163680-1163824)
chr5 (256-400)||(1849912-1850059)
chr5 (83-173)||(1163549-1163639)
chr5 (83-173)||(1850100-1850190)
chr5 (117-149)||(39400042-39400074)
[»] chr4 (2 HSPs)
chr4 (68-400)||(25912100-25912429)
chr4 (269-335)||(44444772-44444838)


Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 39726746 - 39726364
Alignment:
Q  19 ggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtaggctgctgttatcttgaagagtagttgagggtcttgttgtagatcattgaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39726746 ggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtagggtgctgttatcttgaagagtagttgagggtcttgttgtagatcattgaa 39726647  T
Q  119 gaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctgatcaaaatggcagcaggaagg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39726646 gaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctgatcaaaatggcagcaggaagg 39726547  T
Q  219 ttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39726546 ttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgag 39726447  T
Q  319 tcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39726446 tcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg 39726364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 38988027 - 38987651
Alignment:
Q  19 ggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtaggctgctgttatcttgaagagtagttgagggtcttgttgtagatcattgaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38988027 ggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcggtaggctgctgttatcttgaagagtagttgagggtcttgttgtagatcattgaa 38987928  T
Q  119 gaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctgatcaaaatggcagcaggaagg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987927 gaagagttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctgatcaaaatggcagcaggaagg 38987828  T
Q  219 ttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgag 318  Q
    ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987827 ttgttattggtgttggtgtcagctcctccttc------tcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgag 38987734  T
Q  319 tcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987733 tcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg 38987651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 26 - 401
Target Start/End: Complemental strand, 39880135 - 39879760
Alignment:
Q  26 gaagggcccgtcatatgtgtagtggttgtttggatttcggtaggctgctgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagt 125  Q
    ||||||||| ||||||||||||   ||| || ||| ||||||||||||| |||   ||||||  |||| || || |||||||||||||||||||||||||    
T  39880135 gaagggcccatcatatgtgtagcttttggtttgatctcggtaggctgctcttacgctgaagatgagtttagtgttttgttgtagatcattgaagaagagt 39880036  T
Q  126 tgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttat 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39880035 tgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttat 39879936  T
Q  226 tggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgat 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  39879935 tggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgat 39879836  T
Q  326 ttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39879835 ttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg 39879760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 23 - 400
Target Start/End: Complemental strand, 40418601 - 40418230
Alignment:
Q  23 tacgaagggcccgtcatatgtgtagtggttgtttggatttcggtaggctgctgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaag 122  Q
    |||||||||||| ||||||||||||   ||| || ||| ||||||||||||| |||  |||||||| |||| || |||||||||||||||||||||||||    
T  40418601 tacgaagggcccatcatatgtgtagcttttggtttgatctcggtaggctgctcttacgttgaagaggagtttagtgtcttgttgtagatcattgaagaag 40418502  T
Q  123 agttgataatcagattcccacttatccttgacagcaacaactctaccattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgt 222  Q
    |||||||||||||||||||||||||| |  | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||     
T  40418501 agttgataatcagattcccacttatcatgaagagcaacaactctaccattctcttcggcataactaatcttggtgatcaaaatggcagcaggaaggttga 40418402  T
Q  223 tattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcct 322  Q
    ||||| ||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  40418401 tattgatgttggtgtcagctcctccttc------tcctccagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcct 40418308  T
Q  323 gatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggc 400  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40418307 gatttgaaaagttgtgtcattatttccaatatctttcacacgagcaaccacagcatcagctaaacaatattttttggc 40418230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 98 - 400
Target Start/End: Complemental strand, 39169098 - 39168793
Alignment:
Q  98 gtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaac---tctaccattcacttcggcataactaatcttg 194  Q
    ||||||||||||||| || || ||||||||||||||||||||||||||| |||  ||| |||||||   |||||||||  ||||  |||||||| |||||    
T  39169098 gtcttgttgtagatcttttaaaaagagttgataatcagattcccacttaccctcaacaacaacaacaattctaccattttcttcatcataactactcttg 39168999  T
Q  195 ctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagacaggtcataaccaagagcatggtcaccgg 294  Q
     | |||||||| ||||||||||||| |  |||| | ||||||| |||||||||| || ||   | |||||||| ||||||||||||||||| ||||||||    
T  39168998 gtaatcaaaattgcagcaggaaggtcgccattgatattggtgttagctcctcctccttctttacgtccagacaagtcataaccaagagcatagtcaccgg 39168899  T
Q  295 gttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattt 394  Q
     |||||| ||| |||| ||||||||  |||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||| ||||||||    
T  39168898 attttaaaatatgacctagatgagttttgatttgaaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatattt 39168799  T
Q  395 tttggc 400  Q
    ||||||    
T  39168798 tttggc 39168793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 263 - 400
Target Start/End: Complemental strand, 3299620 - 3299480
Alignment:
Q  263 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 359  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  3299620 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 3299521  T
Q  360 acacgagcaaccacagcatcagctaaacgatattttttggc 400  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  3299520 acacgagcaaccatggcatcagctaaacgatattttttggc 3299480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 263 - 400
Target Start/End: Complemental strand, 3392513 - 3392373
Alignment:
Q  263 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 359  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  3392513 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 3392414  T
Q  360 acacgagcaaccacagcatcagctaaacgatattttttggc 400  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  3392413 acacgagcaaccatggcatcagctaaacgatattttttggc 3392373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 256 - 397
Target Start/End: Complemental strand, 39399950 - 39399809
Alignment:
Q  256 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatc 355  Q
    |||||||||||| ||||||||||||||||| |||||||| |||||| ||| |||| |||||||||||||||||||||||||||||||||||||||  ||     
T  39399950 ctcctccagacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaaaatt 39399851  T
Q  356 tttcacacgagcaaccacagcatcagctaaacgatatttttt 397  Q
    || ||||||||||||||| |||||||||||||| ||||||||    
T  39399850 ttccacacgagcaaccacggcatcagctaaacggtatttttt 39399809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 3299779 - 3299639
Alignment:
Q  83 gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccatt---cacttcg 179  Q
    |||||| |||| || ||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||   | |||||    
T  3299779 gaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcg 3299680  T
Q  180 gcataactaatcttgctgatcaaaatggcagcaggaaggtt 220  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  3299679 gcataactaattttggtgatcaaaatggcagcaggaaggtt 3299639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 83 - 220
Target Start/End: Complemental strand, 3392672 - 3392532
Alignment:
Q  83 gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccatt---cacttcg 179  Q
    |||||| |||| || ||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||   | |||||    
T  3392672 gaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcg 3392573  T
Q  180 gcataactaatcttgctgatcaaaatggcagcaggaaggtt 220  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  3392572 gcataactaattttggtgatcaaaatggcagcaggaaggtt 3392532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 256 - 400
Target Start/End: Original strand, 1163680 - 1163824
Alignment:
Q  256 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg-tcattatttccagtat 354  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |||||||||| |||    
T  1163680 ctccttcaggcaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaag-tgtgattattatttccaatat 1163778  T
Q  355 ctttcacacgagcaaccacagcatcagctaaacgatattttttggc 400  Q
    |||| ||||||||||| |  |||| |||||||||||||||||||||    
T  1163779 ctttgacacgagcaactatggcattagctaaacgatattttttggc 1163824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 256 - 400
Target Start/End: Complemental strand, 1850059 - 1849912
Alignment:
Q  256 ctcctccagacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagt 352  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||||| |||||||  |||||||||||||||||||||||||||   | |||||||||| |    
T  1850059 ctccttcaggcaggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaat 1849960  T
Q  353 atctttcacacgagcaaccacagcatcagctaaacgatattttttggc 400  Q
    |||||||||||||||||| |  |||| |||||||||||||||||||||    
T  1849959 atctttcacacgagcaactatggcattagctaaacgatattttttggc 1849912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 1163549 - 1163639
Alignment:
Q  83 gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattc 173  Q
    |||||| |||| |||||||||||||||||| || ||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||    
T  1163549 gaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactctaccattc 1163639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 1850190 - 1850100
Alignment:
Q  83 gaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactctaccattc 173  Q
    |||||| |||| |||||||||||||| ||| || ||||||||||||||||||||||||||||||||||  |||| || |||||||||||||    
T  1850190 gaagaggagtttagggtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataactctaccattc 1850100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 39400074 - 39400042
Alignment:
Q  117 aagaagagttgataatcagattcccacttatcc 149  Q
    |||||||||||||||||||||| ||||||||||    
T  39400074 aagaagagttgataatcagattgccacttatcc 39400042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 68 - 400
Target Start/End: Original strand, 25912100 - 25912429
Alignment:
Q  68 ggctgctgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactcta 167  Q
    ||||||| |||  |||||||  |||| ||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  25912100 ggctgctcttacgttgaagatcagtttagggtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactcta 25912199  T
Q  168 ccattcacttcggcataactaatcttgctgatcaaaatggcagcaggaaggttgttattggtgttggtgtcagctcctccttctcctactcctccagaca 267  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||   |||||| |||||    
T  25912200 ccattctcttcggcataactaatcttggtgatcaaaatggcagcatgaaggttgttattggtgttggtgttagctcctccttctc---ctcctctagaca 25912296  T
Q  268 ggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtgtcattatttccagtatctttcacacgagc 367  Q
    ||||||||||||||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25912297 ggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtgtcattatttccaatatctttcacacgagc 25912396  T
Q  368 aaccacagcatcagctaaacgatattttttggc 400  Q
    ||||||| |||||||||||||||||||||||||    
T  25912397 aaccacatcatcagctaaacgatattttttggc 25912429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 335
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
Q  269 gtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagtt 335  Q
    ||||||||||||||||| |||||| |||||||| |||||||| ||||||||| ||||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 44444838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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