View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21329_low_1 (Length: 638)
Name: NF21329_low_1
Description: NF21329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21329_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 164 - 585
Target Start/End: Original strand, 101505 - 101928
Alignment:
| Q |
164 |
gttgttgttgtcgttgccatcttcgttagcttattttgatttggcactaagaagcaaagatgaccttatgttacaaccatctaataccaaactcactcca |
263 |
Q |
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| T |
101505 |
gttgttgtcgtcgttgccatcttcgttagcttattttgatttggcactaagaagcaaagatgaccttatgttacaaccatctaataccaaactcactcca |
101604 |
T |
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| Q |
264 |
acccaagaaacagatttaacagggacttcctacgaggatacccatcctaaaattctcgaagtcaaatataattaattttaaagtcttatatgttatttat |
363 |
Q |
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| T |
101605 |
acccaagaaacagacttaatggggacttcctacgaggatacccatcccaaagttctcgaagtcaaatatacttaattttaaagtcttataagttatttat |
101704 |
T |
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| Q |
364 |
catttgtagaactccataactgtattgcataacaccacgactcatctcataccagaagcaactcattgaacatactttgattttcaaggatcactcatat |
463 |
Q |
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| T |
101705 |
cacttgtagaactccatacatgtattgcataacaccaagactcatctcataccggaagcaactcattcaacatactttgatttttaaggatcactcatat |
101804 |
T |
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| Q |
464 |
ctctagtaaacttcacacctaacac--nnnnnnncatttatatgtatacatcttttatttttctttacacatattcaacacttcatttttctatcacatc |
561 |
Q |
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| T |
101805 |
ctctagtaaacttcacacctaacacataaaaaaacatttatatgtatacaccttttatttttcttcacacatattcaacacttcatttttctatcacatc |
101904 |
T |
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| Q |
562 |
accaacttatcacatttatcataa |
585 |
Q |
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| T |
101905 |
accaacttatcacatttatcataa |
101928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 101342 - 101430
Alignment:
| Q |
1 |
aggatcatgtgtatggtaagggtgttaaagccattacgtttggccgcataagtcagattagataatatagactgaggacaatgctatcc |
89 |
Q |
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| T |
101342 |
aggatcatttgtatggtaagggtgttaaagccattacgtttggccgcataagacagattagataatatagactgaggacaatgatatcc |
101430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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