View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21329_low_11 (Length: 342)
Name: NF21329_low_11
Description: NF21329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21329_low_11 |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 31033635 - 31033976
Alignment:
| Q |
16 |
caagcttcacacagaaattacttgcttcaaagtcccatagtacattgcgcaacaaaacaattccaggtcctccacaacaaaaccagaatcaaaatacact |
115 |
Q |
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| T |
31033635 |
caagcttcacgcacaaattacttgcttcaaagtcccatagtacattgcgcaacaaaacaattccaggtcctccacaacaaaacgagaatcaaaatacact |
31033734 |
T |
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| Q |
116 |
tcggtgaagactaagcagctgactgactacacaaggatcacacacaaa---------------aaaccctcaacacattgcatttcctacctcccatttc |
200 |
Q |
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| T |
31033735 |
tcggtgaagactaagcagctgactgactacacaaggatcacacaccaacactaaacactccaaaaaccctcaacacattgcatttcctacctcccatttc |
31033834 |
T |
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| Q |
201 |
agaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatatgagatttctacaccagatctccccttatcttctgacttgacgccaac |
300 |
Q |
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| T |
31033835 |
agaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatatgagatttctacaccagatctcccctaatcttctgacttgacgccaac |
31033934 |
T |
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| Q |
301 |
tcctaaaaaaggtagagggttagtccacgactttgatattga |
342 |
Q |
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| T |
31033935 |
tcctaaaaaaggtaaagggttagtccacgacttcgatattga |
31033976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 170 - 341
Target Start/End: Complemental strand, 31098170 - 31097999
Alignment:
| Q |
170 |
tcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatatgagatttctacaccag |
269 |
Q |
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| T |
31098170 |
tcaagacattgcattgccttcctcccacttcagaagtaatgattttaactatccctgactacaatgccagcctgagtcagatacgagatatttacacaaa |
31098071 |
T |
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| Q |
270 |
atctccccttatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacgactttgatattg |
341 |
Q |
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| T |
31098070 |
acctcccctagtcttctgactcgatgccaagtcctaaacaaactaaaggtttagtccaccactgcgatattg |
31097999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 65 - 341
Target Start/End: Complemental strand, 31319 - 31028
Alignment:
| Q |
65 |
caacaaaacaattccaggtcctccacaacaaaaccagaatcaaaatacacttcggtgaagactaagcagctgactgactacacaaggatcacacacaaa- |
163 |
Q |
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| T |
31319 |
caacaaaacaattccaggtcctccacaacaaaaccagaatcaaaatacacttcggtgaagactaagcagctgactgactacacaaggatcacacaccaac |
31220 |
T |
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| Q |
164 |
--------------aaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcag |
249 |
Q |
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| T |
31219 |
actaaacactccaaaaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcag |
31120 |
T |
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| Q |
250 |
atatgagatttctacaccagatctccccttatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacgactttgatattg |
341 |
Q |
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| T |
31119 |
aaatgggatttctacaccagatctcccctaatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacaactttgatattg |
31028 |
T |
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