View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21329_low_13 (Length: 245)
Name: NF21329_low_13
Description: NF21329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21329_low_13 |
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| [»] scaffold0437 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27024780 - 27024558
Alignment:
| Q |
1 |
cacctgagttgatgtagtattttgaattttagggttaaagttccttgtccaagcaaaaagtttcaacaccccagggtttagattcgacaatgaagtggat |
100 |
Q |
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| T |
27024780 |
cacctgagttgatgtagtattttgaattttagggttaaagttccttgtccaagcaaaaagtttcaacaccccagggtttagattcgacgatgaagtggat |
27024681 |
T |
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| Q |
101 |
ttaactcttttgacatcttccaaagatgaaaaagagaattcataaaaaacctttacgcagagcaatatcagtgagatgagttgtacctttggg-catatc |
199 |
Q |
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| T |
27024680 |
ttaactcttttgacatcttccaaagatgaaaaagagaattcataaaaaagctttacgcagagcaatatcagtgagatgagttgtacctttgggccatatc |
27024581 |
T |
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| Q |
200 |
actcttgcgtgtaggttgaactt |
222 |
Q |
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||||||| ||||||||||||||| |
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| T |
27024580 |
actcttgtgtgtaggttgaactt |
27024558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 142
Target Start/End: Complemental strand, 24767040 - 24766900
Alignment:
| Q |
2 |
acctgagttgatgtagtattttgaattttagggttaaagttccttgtccaagcaaaaagtttcaacaccccagggtttagattcgacaatgaagtggatt |
101 |
Q |
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| T |
24767040 |
acctgagttgaggttgtattttgaactttagggttaaaatcccttgtccaggaaaaaagcttcaaaactccaggatttagtttccatgaagaggtggata |
24766941 |
T |
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| Q |
102 |
taactcttttgacatcttccaaagatgaaaaagagaattca |
142 |
Q |
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| T |
24766940 |
tgactcttttaacatcttccaaagatggaaaagagaattca |
24766900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0437 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0437
Description:
Target: scaffold0437; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 4218 - 4343
Alignment:
| Q |
10 |
tgatgtagtattttgaattttagggttaaagttccttgtccaagcaaaaagtttcaacaccccagggtttagattcgacaatgaagtggatttaactctt |
109 |
Q |
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|||||||| ||||||||||| |||||||| | | |||||| ||||| ||||| | || |||||||| |||||| || | || |||||| | ||||| |
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| T |
4218 |
tgatgtagagttttgaattttggggttaaaatctcgtgtccaggcaaacagttttagaactccagggttgagattccacgaggaggtggatctgactctc |
4317 |
T |
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| Q |
110 |
ttgacatcttccaaagatgaaaaaga |
135 |
Q |
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| T |
4318 |
ttaacatcttctaaagatgaaaaaga |
4343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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