View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21329_low_2 (Length: 607)
Name: NF21329_low_2
Description: NF21329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21329_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 287 - 587
Target Start/End: Original strand, 7319901 - 7320189
Alignment:
| Q |
287 |
ccactcgtttttgccttctagactcatgaattctcacaagtctatgagtttatccgtgagtttgacaattatattgttctgaagttaacttatataattg |
386 |
Q |
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| T |
7319901 |
ccactcgtttttgccttctagactcatgaattctcacaagtctataagtttatccgtgagtttgacaattatattgttctaaagttaacttatataattg |
7320000 |
T |
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| Q |
387 |
nnnnnnnctttggttgatgaagtagaaaacaccacttgaaattcacacacacaactataatgtttcagatttgaatccggatgaagatgtcaatattacc |
486 |
Q |
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| T |
7320001 |
tttttttctttggttgatgaagtagaaaacaccacttgaaattcacacacacaact------------atttgaatccggatgaagatgtcaatattaca |
7320088 |
T |
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| Q |
487 |
ggttgagctacaacatacgactatataagaaaaatgaatttctcaattgcacaactcattcatttcctcccttgtcctttctctctatccactatcacca |
586 |
Q |
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| T |
7320089 |
ggttgagctacaacatacgactatataagaaaaatgaatttctcaattgcacaactcattcatttcctcccttgtcctttctctctatccactatcacca |
7320188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 7319760 - 7319861
Alignment:
| Q |
146 |
tccacatcagcaaatgaaaattaggtggataatgaaatgatataatatattttgatataatatatttcacatctgcaaagatgagctcaaatgtggtggc |
245 |
Q |
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| T |
7319760 |
tccacatcagcaaataaaaattaggtggataatgaaatgatataatatattttgatataatatatttcacatctgcaaagatgaactcaaatgtggtggc |
7319859 |
T |
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| Q |
246 |
gt |
247 |
Q |
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|| |
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| T |
7319860 |
gt |
7319861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 399 - 575
Target Start/End: Original strand, 7301987 - 7302170
Alignment:
| Q |
399 |
gttgatgaagtagaaaacaccacttgaaattcacacacacaactataatgtttcagatttgaatccggatgaagatgtcaatattaccggttgagctaca |
498 |
Q |
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| T |
7301987 |
gttgataaagtggtaaacaccacttaaaattcacacacacaactataatgtctcatgttagaacccaaacgaaaatatcaatattaccaattgagctaca |
7302086 |
T |
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| Q |
499 |
acatacgactatat-------aagaaaaatgaatttctcaattgcacaactcattcatttcctcccttgtcctttctctctatc |
575 |
Q |
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| T |
7302087 |
ccatacaagcatataaatttcaagagaaaggaatttctcaattgcacaactcactcttttcctccctcgtgctctctctctatc |
7302170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 72
Target Start/End: Original strand, 7319657 - 7319686
Alignment:
| Q |
43 |
tacaattataaaagaaaggcttaattgtag |
72 |
Q |
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| T |
7319657 |
tacaattataaaagaaaggcttaattgtag |
7319686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 196
Target Start/End: Original strand, 1457330 - 1457363
Alignment:
| Q |
163 |
aaattaggtggataatgaaatgatataatatatt |
196 |
Q |
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| T |
1457330 |
aaattaggtggataatgaaatgatataatttatt |
1457363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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