View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21329_low_3 (Length: 602)
Name: NF21329_low_3
Description: NF21329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21329_low_3 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0022 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 16 - 602
Target Start/End: Complemental strand, 15886865 - 15886282
Alignment:
| Q |
16 |
atttataaaacgtatggacttaattataaacatatatttttacatttctcatattttcagagtggacaatcagtgtgctgataaaatttcctcaattgac |
115 |
Q |
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| T |
15886865 |
atttataaaacgtatggacttaattataaacatgtatttttacatttctcatattttcagagtgggcaatcagtgtgctgataaaatttcctcaattgac |
15886766 |
T |
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| Q |
116 |
cttcatcaaaatagtatgatttagataagttctactcctttagattctttaaatcgtaatagattaggcttctctgagtcccgattttgttgacgttgat |
215 |
Q |
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| T |
15886765 |
cttcatcaaaatagtatgatttagataagttctactcctttagattctttaaatcgtaatagattaggcttctctgagtcccaattttgttgacgttgat |
15886666 |
T |
|
| Q |
216 |
ctgtgttaagagttatcttcttttttgtttcaattattgtttgctctgtactcatttttcattaaagtagatgttgaaaaatgtatttaatgaggtagat |
315 |
Q |
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| T |
15886665 |
atgtgttaagagttatcttctttgttgtttcaattattgtttgctctgtactcatttttcattaaagtagatgttgaaaaatgtatttaatgaggtagat |
15886566 |
T |
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| Q |
316 |
gttgagttctctaattggttttctgacttgagttttggtctagtcccccaagtgcctttgcatctttattttcttttcttaataatatttcttgagtgtt |
415 |
Q |
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| T |
15886565 |
gttgagttctc---ttggttttctgacttgagttttggtctagtcccccaagtgtctttgcatctttattttcttttcttaataatatttcttgagtgtt |
15886469 |
T |
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| Q |
416 |
gcagtcaataggggcaactaaggctctctttggattatttaaaactgtcggagcatagcgggatggaatagaatggaatggagattccattccactattt |
515 |
Q |
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| T |
15886468 |
gcagtcgataggggcaactaaggctctctttggattatttaaaactgacggagcatagtgggatggaatagaatggaatggagattccattccactattt |
15886369 |
T |
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| Q |
516 |
acatttttcatgatggaatggaatagagtactcatctcattgtttggaaagtagaccgagaggaatgagttataactttttcattcc |
602 |
Q |
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| T |
15886368 |
acatatttcatgatggaatggaatagagtactcatctcattgtttggaaagtagatcgagaggaatgagttataactttttcattcc |
15886282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 4167655 - 4167607
Alignment:
| Q |
43 |
aaacatatatttttacatttctcatattttcagagtggacaatcagtgt |
91 |
Q |
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| T |
4167655 |
aaacatgtatttttacatttctcatattttcagagaggtcaagcagtgt |
4167607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 553 - 596
Target Start/End: Original strand, 43546 - 43589
Alignment:
| Q |
553 |
cattgtttggaaagtagaccgagaggaatgagttataacttttt |
596 |
Q |
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| T |
43546 |
cattgtttggaaagtagacagaacggaatgagttataacttttt |
43589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 553 - 596
Target Start/End: Original strand, 77266 - 77309
Alignment:
| Q |
553 |
cattgtttggaaagtagaccgagaggaatgagttataacttttt |
596 |
Q |
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| T |
77266 |
cattgtttggaaagtagacagaacggaatgagttataacttttt |
77309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 13218913 - 13218853
Alignment:
| Q |
43 |
aaacatatatttttacatttctcatattttcagagtggacaatcagtgtgctgataaaatt |
103 |
Q |
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| T |
13218913 |
aaacatgtatttttacagtttccatattttcagtgagggcgatcagtgtgctgataaaatt |
13218853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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