View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21329_low_4 (Length: 590)
Name: NF21329_low_4
Description: NF21329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21329_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 17 - 585
Target Start/End: Complemental strand, 51548558 - 51547990
Alignment:
| Q |
17 |
aattatttgcactatcaaaatccattaaatgataccctaaccattttactcggttatccgtcgcagaaccaggtccataatttgcaaactcaccataata |
116 |
Q |
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| T |
51548558 |
aattatttgcactatcaaaatccattaaatgataccctaaccattttactcggttatccgtcgcagaaccaggtccataatttgcaaactcaccataata |
51548459 |
T |
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| Q |
117 |
caaagtgtccaaccctttatcatcatcagaagaccatttcgtccatcccattggatcaatgaacacatcaatgtaagactcaatgaaaacagtcctagaa |
216 |
Q |
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| T |
51548458 |
caaagtgtccaaccctttatcatcatcagaagaccatttcgtccatcccattggatcaatgaacacatcaatgtaagactcaatgaaaacagtcctagaa |
51548359 |
T |
|
| Q |
217 |
taaaccctccaaggccttccaaggtaactcttgatgttgttagagttgttatacaaatcagtagtagctaaaattgaacagttttggattgagatgccag |
316 |
Q |
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| T |
51548358 |
taaaccctccaaggccttccaaggtaactcttgatgttgttatagttgttatacaaatcagtagtagctaaaattgaacagttttggattgagatgccag |
51548259 |
T |
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| Q |
317 |
tgtcttcatcaggtgaatctcttgactgtgcagtgatgacagtgtattggttaggtaatggcattcttgatataatattacatgcttgtaaaactactgc |
416 |
Q |
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| T |
51548258 |
tgtcttcatcaggtgaatctcttgactgtgcagtgattacagtgtattggttaggtaatggcattcttgatataatgttacatgcttgtaaaactactgc |
51548159 |
T |
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| Q |
417 |
tgcatttccaaatatgtaatctatggtcccaaaaatatcacactctctatagaattgtctaaatgagtgaacataaagtgtgtcttggtaaccatacatt |
516 |
Q |
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| T |
51548158 |
tgcatttccaaatatgtaatctatggtcccaaaaatgtcacactctctatagaattgtctaaatgagtgaacataaagtgtgtcttggtaaccatacatt |
51548059 |
T |
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| Q |
517 |
gcacatttgtaaaaagctgttacgtctgcattcactcttaatgcaactgcttgatgcttctctgctcct |
585 |
Q |
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| T |
51548058 |
gcacatttgtaaaaagctgttacgtctgcgttcactcttaatgcaactgcttgatgcttctctggtcct |
51547990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 82 - 580
Target Start/End: Complemental strand, 19476920 - 19476428
Alignment:
| Q |
82 |
gaaccaggtccataatttgcaaactcaccataatacaaagtgtccaaccctttatcatcatcagaagaccatttcgtccatcccattggatcaatgaaca |
181 |
Q |
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| T |
19476920 |
gaaccaggtccataattttcatattcaccataaaacaatgtatccaaaccttgatcattt------gaccatttggtccaacccttttgatcaataaaat |
19476827 |
T |
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| Q |
182 |
catcaatgtaagactcaatgaaaacagtcctagaataaaccctccaaggccttccaaggtaactcttgatgttgttagagttgttatacaaatcagtagt |
281 |
Q |
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||||||| ||||||||||| ||||| || |||||| |||||||||| ||||| |||||||||||||||| || ||||||| ||| | ||| || |
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| T |
19476826 |
catcaatataagactcaattaaaaccgttctagaaaaaaccctccacggcctcccaaggtaactcttgaccttactagagtttgaataaagctcatccgt |
19476727 |
T |
|
| Q |
282 |
agctaaaattgaacagttttggattgagatgccagtgtcttcatcaggtgaatctcttgactgtgcagtgatgacagtgtattggttaggtaatggcatt |
381 |
Q |
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| T |
19476726 |
agcgataatcgaacaattttggattgaaattcccgtgtcttcgtcagggttatcccgtgattgcgcggttataactgtaaattgaccaggtaatggcatt |
19476627 |
T |
|
| Q |
382 |
cttgatataatattacatgcttgtaaaactactgctgcatttccaaatatgtaatctatggtcccaaaaatatcacactctctatagaattgtctaaatg |
481 |
Q |
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||||||| || | ||| ||||||| |||||||| || || ||||||||| ||||||| ||||| |||| || || || | ||||||||||| |||| |
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| T |
19476626 |
cttgatacgatgtcgcattcttgtaatactactgcggcgttaccaaatatgaaatctattgtcccgtaaatgtcgcattcgcggtagaattgtctgaatg |
19476527 |
T |
|
| Q |
482 |
agtgaacataaagtgtgtcttggtaaccatacattgcacatttgtaaaaagctgttacgtctgcattcactcttaatgcaactgcttgatgcttctctg |
580 |
Q |
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|||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||||| ||||||| |
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| T |
19476526 |
agtggacataaagtgtgtcttggtaaccataaattgcgcatttgtaaaatgctgttaaatctgcatttactcttaatgcaactgcttgatgtttctctg |
19476428 |
T |
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