View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21329_low_6 (Length: 526)
Name: NF21329_low_6
Description: NF21329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21329_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 3744303 - 3743788
Alignment:
| Q |
1 |
caaaacaaacacactctgtttcttgtcaatcccctgcatgttccgcagcgcatgcatccatgtcttctagtaacctttgtgctatttcacgttgtccttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3744303 |
caaaacaaacacactctgtttcttgtcaatcccctgcatgttccgcagcgcatgcatccatgtcttctagtaacctttgtgctatttcacgttgtccttt |
3744204 |
T |
|
| Q |
101 |
agatttcatcgaaacttctgattgttcttctttttcttgtccacctttttactacgcttatggtgatggaagcttcgtcgctaatctctaccaacaaaca |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||| |
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| T |
3744203 |
agattacatcgaaacttctgattgttcttctttttcttgtccacctttttactatgcttatggtgatggaagcttcgtagctaatctgtatcaacaaaca |
3744104 |
T |
|
| Q |
201 |
ctgtctatctctactcttcatcttcagaatttcacgtttggttgtgctcatactgcactcgctgaacccaccggcgtagctggttttggccgcggaattt |
300 |
Q |
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|| ||| ||||| ||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3744103 |
ctttctctctcttctcttcatcttcaaaacttcacgtttggttgtgctcatactgcacttgctgaacccaccggcgtagctggttttggccgcggaattt |
3744004 |
T |
|
| Q |
301 |
tatctcttccggcacagctctctactctctcacctcatttgggtaatcgtttttcttattgtttagtttctcactctttcgacggtgacagactccggcg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3744003 |
tatctcttccggcacagctctctactctctcacctcatttgggtaatcgtttttcttattgtttagtttctcactctttcgacggtgacagactccggcg |
3743904 |
T |
|
| Q |
401 |
accgagtccactcattctcggtcgtcacaatgacaccataacctgcgccggagacggagaatctgttgagtttgtctatacttccatgctttcaaaccca |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3743903 |
accgagtccactcattctcggtcgtcacaatgacaccataaccggcgccggagacggagaatctgttgagtttgtctatacttccatgctttcaaaccca |
3743804 |
T |
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| Q |
501 |
aagcatccttattact |
516 |
Q |
| |
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|||||||||||||||| |
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| T |
3743803 |
aagcatccttattact |
3743788 |
T |
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