View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21329_low_7 (Length: 514)
Name: NF21329_low_7
Description: NF21329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21329_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 507
Target Start/End: Complemental strand, 28634720 - 28634223
Alignment:
| Q |
18 |
gatatagcatgttaccgccccacaataactattgtgaagtaaattatgattgtatgtttgattaatattaaaactttagttgaatgcaannnnnnnnnnn |
117 |
Q |
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| T |
28634720 |
gatatagcatgttaccgccccacaataactattgtgaagtaaattatgattgtatgtttgattaatattaaaactttagttaaatgcaatttttttttt- |
28634622 |
T |
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| Q |
118 |
ngtttcatgtaaaaacctaggttaaatttattgaagtgtaatttttt-atatttagtgggaataaatcacttaactatccacgttaaatgtttttaagaa |
216 |
Q |
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| T |
28634621 |
-gtttcatgtaaaaacctaggttaaatttattgaagtgtaatttttttatatttagtgggaaaaaatcatttaactatccacattaaatgtttttaagaa |
28634523 |
T |
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| Q |
217 |
tcaacatggcgttgagagagttgacaacatgactcttctctataaaaagaatttgtgttcaatctttagagttgctcagaagatctcgctaccaacttga |
316 |
Q |
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| T |
28634522 |
tcaacatggtgttgagagagttgacaacatgactcttctctacaaaaagaatttgtgttcaatctttagagtcgctctgaagatctcgctaccaacttga |
28634423 |
T |
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| Q |
317 |
ggtttaatctcatagtgaccgtgagataccttgaaacacaaaggatcataga--ttcagatacatgagagcaaaacgaataaaatatatgaagaaatata |
414 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28634422 |
ggtttaatctcatagtgaccgtgagataccttaaaacacaaaggatcatagatctacatatacatgagagcaaaacgaataaaatatatgaa-aaatata |
28634324 |
T |
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| Q |
415 |
gaaatgtttttgaattgataatgtcctttgg--------actatatatacttagtgtagtatagtacgatagtatacttttttattaaattgatgatgtc |
506 |
Q |
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| T |
28634323 |
gaaatgtttttgaattgataatgtcctttggactataatactatatatacttagtgtagtatagtacgatagtattcttttttattaaattgatgatgtc |
28634224 |
T |
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