View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21329_low_8 (Length: 450)
Name: NF21329_low_8
Description: NF21329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21329_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 38 - 436
Target Start/End: Original strand, 742395 - 742793
Alignment:
| Q |
38 |
gtattcttaacatatgtttatttttgtattttatcaatcgataggtaagtgtcatcatcataaaataaacaaccaccataaattgtttccattaggtcat |
137 |
Q |
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| T |
742395 |
gtattcttaacatatgtttatttttgtattttatcaatcgataggtaagtgtcatcatcataaaacaaacaaccaccataaattgtttccattaggtcat |
742494 |
T |
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| Q |
138 |
ttcacgtttctttgcgcgtgacaaaagcattgagtgtaaacaactatctttatgcaacatcaaatacatcatcaattatcgttgtttatggatatcaaat |
237 |
Q |
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| T |
742495 |
ttcacgtttctttgcgcgtgacaaaagcattgagtgtaaacaactatctttatgcaacatcaaatacatcatcaattatcgttgtgtatggatatcaaat |
742594 |
T |
|
| Q |
238 |
ttatgtgataagcaattgtccgtacctcnnnnnnnnnnnnncatttgtccataatatatgatttttaaatattagagcattcataatttagctatttggg |
337 |
Q |
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| T |
742595 |
ttatgtgataagcaattgtccgtacctcaaaaaagaaaaaacatttgtccataatatatgatttttaaacattagagcattcataatttagctatttgag |
742694 |
T |
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| Q |
338 |
agattgatttgtccgttaacttagttaagttggtacgaacattgtattatatatgcatggaccagaggttcaaataccagatttcccacttattcatct |
436 |
Q |
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| T |
742695 |
agattgatttgtccgttaacttagttaagttggtatgaacattgcattatatatgcatggaccagaggttcaaataccagatttcccacttattcatct |
742793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 740515 - 740606
Alignment:
| Q |
38 |
gtattcttaacatatgtttatttttgtattttatcaatcgataggtaagtgtcatcatcataaaataaacaaccaccataaattgtttccatta |
131 |
Q |
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| T |
740515 |
gtattcttaacat--gtttatttttgtattttatcaatcaataggtaagtgtcatcatcataaaacaaacaaccatcataaattgtttccatta |
740606 |
T |
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