View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2132_high_2 (Length: 461)
Name: NF2132_high_2
Description: NF2132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2132_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Complemental strand, 36075929 - 36075513
Alignment:
| Q |
9 |
gaagaatatgaggaagtggagtggcataaaagaggtttggaatcctttgatccctttgagaggttaatttaagtgcttcgttattgtgttatggttgtgg |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36075929 |
gaagaaaatgaggaagtggagtggcataaaagaggtttggaatcctttgatccctttgagaggttaatttaagtg-------------ttatggttgtgg |
36075843 |
T |
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| Q |
109 |
taaactcgaaactattaatcacatcttt-caaatatggttgttggcaataaacgagtcattctattcaatttttcagattgtgtgaaaaaactgaagatt |
207 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36075842 |
taaactcgaaactattaatcacatcttttcaattatggttgttggcaataaacgagtcattctattcaattattcagattgtgtgaaaaaactgaagatt |
36075743 |
T |
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| Q |
208 |
tatgttcagttgtgtatgtatgtgggaaatgtatcccttaagatcgagcttataaatccaagaccagtggctagaaatgtatcaagttctcttaaatttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36075742 |
tatgttcagttgtgtatgtatgtgggaaatgtatccgttaagatcgagcttataaatccaagaccagtggctagaaatgtatcaagttctcttaaatttt |
36075643 |
T |
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| Q |
308 |
gaggttctaaatccaagaccagcagaaataagcatcaatttcatcattattatggttgagattatgaggcatttaactttctttggcagtataatatcca |
407 |
Q |
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| T |
36075642 |
gaggttctaaatccaagaccagcaga---aagcatcaatttcatcattattatggttgag---ataaggcatttaactttctttggcagtataatatcca |
36075549 |
T |
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| Q |
408 |
ttccatgctccatatcatggtatcatcaatatcaac |
443 |
Q |
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| T |
36075548 |
ttccatgctccatatcatggtatcatcaaaatcaac |
36075513 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 4217331 - 4217361
Alignment:
| Q |
37 |
aaagaggtttggaatcctttgatccctttga |
67 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
4217331 |
aaagaggtttggaatcctttgatccctttga |
4217361 |
T |
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