View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2132_high_3 (Length: 443)
Name: NF2132_high_3
Description: NF2132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2132_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 39945403 - 39945842
Alignment:
| Q |
1 |
catgtgactaaaagataataggttgaagttttaaaaac----------gtttaaattttgattttctacattgtgagtctaactcgtatcgctaaaccaa |
90 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39945403 |
catgtgactaaaagataataggttgaagttttaaaaacaacctcttatgcttaaattttgattttctacattgtgagtctaactcgtatcgctaaaccaa |
39945502 |
T |
|
| Q |
91 |
cccttgctggtataatctgttatttatatgnnnnnnnttacaagaaatatacttgtgagaatgcacttaaagttaagtaagtgtgttaaagaggggcgga |
190 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39945503 |
cccttgttggtataatctgttatttatatgaaaaaaattacaagaaatatacttgtgagaatgcacttaaacttaagtaagtgtgttaaagaggggcgga |
39945602 |
T |
|
| Q |
191 |
ggagagtggggacatgtaggtgtcatggctctccaagtttcaaaattcatgagatttacatagtcaaatcttttat----gaccctagctataccggttg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39945603 |
ggagagtggggacatgtaggtgtcatggctctccaagtttcaaaattcatgagatttacatagtcaaatcttttatatatgaccctagctataccggttg |
39945702 |
T |
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| Q |
287 |
gttgcaaagcaatgtttgcatgaaaataattgcttggaaaggcatgatgcatgagtgtgatgtgtggcagaaggtgttaagtgttaacacatgttgggag |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |
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| T |
39945703 |
gttgcaaagcaatgtttgcatgaaaataattgcttggaaaggcatgatgcatgagtgtgatgcgtggcagaaagtgttaagtgttaacacacgttgggag |
39945802 |
T |
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| Q |
387 |
atcaagtttagaaagatggaggggtagaatgagatttttg |
426 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| |
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| T |
39945803 |
ataaagtttagaaagatggaggggtagaatgagatttttg |
39945842 |
T |
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