View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2132_low_1 (Length: 671)

Name: NF2132_low_1
Description: NF2132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2132_low_1
NF2132_low_1
[»] chr4 (1 HSPs)
chr4 (1-654)||(1347378-1348031)


Alignment Details
Target: chr4 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Complemental strand, 1348031 - 1347378
Alignment:
Q  1 cactgcttcttccgtcgccggcggtggcggagtagcaccgcgaccttccttcctgaaaatcaatcaactccaaccttcaaactcctcacactcattggtt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1348031 cactgcttcttccgtcgccgtcggtggcggagtagcaccgcgaccttccttcctgaaaatcaatcaactccaaccttcaaactcctcacactcattggtt 1347932  T
Q  101 gcacctcctcttcgtctctctgctcttccaaacgaagaaggtggtgaactcaataccttccccgctctaccttctctccctcaggtatctctctcaaaca 200  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1347931 gctcctcctcttcgtctctctgctcttccaaacgaagacggtggtgaactcaataccttccctgctctaccttctctccctcaggtatctctctcaaaca 1347832  T
Q  201 attcttctcttttgattccatttttacctttttattgtgtttgattctgcggtaacaataattgatttttattgaatttaattgaaatgtgaattcaagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1347831 attcttctcttttgattccatttttacctttttattgtgtttgattctgcggtaacaataattgatttttattgaatttaattgaaatgtgaattcaagt 1347732  T
Q  301 ttaagtgatttatgtttcaatacatgcatttaaaagtgagtgatttcaaattcatgtaataatcaattctataattttacaatcaaatttgctttttctg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1347731 ttaagtgatttatgtttcaatacatgcatttaaaagtgagtgagttcaaattcatgtaataatcaattctataattttacaatcaaatttgctttttctg 1347632  T
Q  401 aaagtgaaactaaaaatgcactactgttgttaagtataactgttttttcccttagaactataatgaattataatttgaagcagttattggtgagtgtacg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1347631 aaagtgaaactaaaaatgcactactgttgttaagtataactgttttttcccttagaactataatgaattataatttgaagcagttattggtgagtgtacg 1347532  T
Q  501 tttgtttcacttttgaaagaggggaaaattgattcaaaagtaaagaattgattttgctatatgcgagtgttttttagtagagttaattttgcctttttga 600  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1347531 tttgttttacttttgaaagaggggaaaattgattcaaaagtaaagaattgattttgttatatgcgagtgttttttagtagagttaattttgcctttttga 1347432  T
Q  601 tgctgaaaatttgagcttttgccttcaaaattgatttttagcatcggatgtatt 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1347431 tgctgaaaatttgagcttttgccttcaaaattgatttttagcatcggatgtatt 1347378  T

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