View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2132_low_10 (Length: 300)
Name: NF2132_low_10
Description: NF2132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2132_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 284
Target Start/End: Original strand, 6915476 - 6915751
Alignment:
| Q |
9 |
agcaaaggaagtttggtcagttaacatatctaagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaaaattaa |
108 |
Q |
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| T |
6915476 |
agcaaacgaagtttggtcagttaacatatctaagagtttatgagggtgtcattcggaagggtgattttattgttaatgttagcactggaaagaaaattaa |
6915575 |
T |
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| Q |
109 |
ggttcctcgcttagttgagatgcattctaatgagatgaatgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatcc |
208 |
Q |
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| T |
6915576 |
ggttcctcgcttagttcagatgcattctaatgagatgaacgacattgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatcc |
6915675 |
T |
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| Q |
209 |
ggcgatacatctactgatgggtcggttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattag |
284 |
Q |
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| T |
6915676 |
agcgatacatttactgatgggtcggttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattag |
6915751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 15041895 - 15041840
Alignment:
| Q |
152 |
attgaagaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatc |
207 |
Q |
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| T |
15041895 |
attgatgaggctcatgctggccaaatagttgctgtatttggtgttgattgtgcatc |
15041840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 15040337 - 15040273
Alignment:
| Q |
220 |
tactgatgggtcggttaaatacacaatgacttctatgaatgttcctgagcccgtgatgtcattag |
284 |
Q |
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| T |
15040337 |
tactgatgggtctgttaaatatacaatgacttcaatgagtgttcctgagcctgtgatgtcattag |
15040273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 15043854 - 15043792
Alignment:
| Q |
40 |
aagagtttatgagggcgtcattcggaagggtgattttattgttaatgttagcactggaaagaa |
102 |
Q |
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| T |
15043854 |
aagaatttatgagggcgtcattcggaagggtgatttcattattaatgttaacactggcaagaa |
15043792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 35856854 - 35856932
Alignment:
| Q |
158 |
gaggcccatgctggccaaatagttgctgtatttggtgttgattgtgcatccggcgatacatctactgatgggtcggtta |
236 |
Q |
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||||| |||||||| ||||| |||| ||||| || ||||||||||||| | || || |||| |||||||||||| |||| |
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| T |
35856854 |
gaggctcatgctggacaaattgttgttgtatgtgatgttgattgtgcaccaggagaaacatttactgatgggtctgtta |
35856932 |
T |
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