View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2132_low_14 (Length: 244)
Name: NF2132_low_14
Description: NF2132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2132_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 30858553 - 30858784
Alignment:
| Q |
1 |
cttttaccctgaaagacgattattcaagagaatgtatcgagacaagacatttccaaaaccatttgaataaatgatctatgttacataagaaagaaaaact |
100 |
Q |
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| T |
30858553 |
cttttaccctgaaagatgattattcaagagaatgtattgagacaagacatttccaaaaccatttgaataaatgatctatgttacataagaaagaaaaact |
30858652 |
T |
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| Q |
101 |
tgcaagaagcaacatgcataatataataacataacag-aaaactacaacatcataaataaccaatcaaattcgtaacagaaaactaaaaggaaaacatta |
199 |
Q |
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| T |
30858653 |
tgcaagaagcaacatgcgtaatataataacataacagaaaaactacaacatcataaataaccaatcaaattcgtaatagaaaactaaaaggaaaacatta |
30858752 |
T |
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| Q |
200 |
caaatgaaaagccacgtactatggtatgcatg |
231 |
Q |
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| T |
30858753 |
caaatgaaaagccacgcactatggtatgcatg |
30858784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 30878412 - 30878501
Alignment:
| Q |
48 |
catttccaaaaccatttgaataaatgatc--tatgttacat-aagaaagaaaaacttgcaagaagcaacatgcataatataataacataa |
134 |
Q |
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| T |
30878412 |
catttccaaaagcatttgaataaatgatccatatattacataaaggaggacaaacttgcaagccagaacatgcacaatataataacataa |
30878501 |
T |
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