View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2132_low_15 (Length: 240)
Name: NF2132_low_15
Description: NF2132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2132_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 31034394 - 31034604
Alignment:
| Q |
18 |
atacaaaacattgtcggggattaaataaagaaaagattaaattcaaacaaaccaacaaatcacataagttaaaaattgatgctatatgttgtagctcaca |
117 |
Q |
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| T |
31034394 |
atacaaaacattgtcggggattaaataaagaaaagattaaattcaaacaaaccaacaaatcacataagttaaaaattgatgctatatgttgtagctcaca |
31034493 |
T |
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| Q |
118 |
atcttacacacaccaacttatcaggtactaatccttgtatcaaaatcatttcaatgtgatttggaagaagagcaaagttgaagctcctaaatgattaatg |
217 |
Q |
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| T |
31034494 |
atcttacacacaccatcttatcaggtactaatccttgtatcaaaatcatttcaatgtgatttggaagaagagcaaagttgaagctcctaaatgattaatg |
31034593 |
T |
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| Q |
218 |
taagcttattc |
228 |
Q |
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||||||||||| |
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| T |
31034594 |
taagcttattc |
31034604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 38824544 - 38824505
Alignment:
| Q |
189 |
gcaaagttgaagctcctaaatgattaatgtaagcttattc |
228 |
Q |
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| T |
38824544 |
gcaaagttgaagctctaaaatgattaatgtaagcttattc |
38824505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 30366542 - 30366503
Alignment:
| Q |
189 |
gcaaagttgaagctcctaaatgattaatgtaagcttattc |
228 |
Q |
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| T |
30366542 |
gcaaagttgaagctctgaaatgattaatgtaagcttattc |
30366503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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