View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2132_low_6 (Length: 352)
Name: NF2132_low_6
Description: NF2132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2132_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 37922281 - 37922626
Alignment:
| Q |
1 |
actaccagaccccatttccctatacttcaccaggtccatttttctttttcttatcctcaatactattttcttaaattaacttttcaactgttcagatagt |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37922281 |
actaccagaccccatttccctatccttcaccaggtgcatttttctttttcttatcctcaatactattttcttaaattaacttttcaactgttcagatagt |
37922380 |
T |
|
| Q |
101 |
ccattttttaattttcagccttattgtcatattgcaaacttaatgttacaacttataaatactagtttcatgatatactccatgtggaacggggaccttc |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37922381 |
ccatttttaaattttcagccttattgtcatattgcaaacttaatgttacaacttataaatactagtttcatgatatactccatgtggaatggggaccttc |
37922480 |
T |
|
| Q |
201 |
cagcatataacgtcatttacataagttatctc------ctaccagatatggtgcttaggcatataactttatgtgtcaagtcaaatcaagcccaaagctt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37922481 |
cagcatataacgtcatttacataagttatctcctactactacgagatatggtgcttaggcatataactttatgtgtcaagtcaaatcaagcccaaagctt |
37922580 |
T |
|
| Q |
295 |
aagaatcaaactaatacatgtacaatgcaacttataaccatgcctt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37922581 |
aagaatcaaactaatacatgtacaatgcaacttataaccatgcctt |
37922626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University