View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2132_low_8 (Length: 337)
Name: NF2132_low_8
Description: NF2132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2132_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 32199055 - 32198748
Alignment:
| Q |
18 |
ataccaacttgatataatgaaaatgtcggggtaattattcacggtgattaaaaacaaattagaaaagaaatagaatatacaccaagaacaaacgttgagg |
117 |
Q |
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| T |
32199055 |
ataccaacttgatataatgaaaatgtcggggtaattattcacggtgattaaaaacaaattagaaaagaaatagaatatacactaagaacaaacgttgagg |
32198956 |
T |
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| Q |
118 |
agagatcctccatttgatgctcttgacgtttgactttttctagaatcgtcaagttttaaattagaattcgtgaatgagaatttttgtagttaaaggcaag |
217 |
Q |
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| T |
32198955 |
agagatcctccatttgatgctcttgacgtttgactttttctagaatcgtcaagttttaaattagaatttgtgaatgagaatttttgtagttataggcaag |
32198856 |
T |
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| Q |
218 |
ttttcaactgagtttgagttgnnnnnnnggactttttccacaaactcgtagagaaaaaacagcaaaacacaattatcttacgttatttttcagcatattt |
317 |
Q |
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| T |
32198855 |
ttttcaactgagtttgagttgaaaaaatgggctttttccacaaactcgtagagaaaaaacagcaaaacacaatcatcttatgtta-ttttcagcatattt |
32198757 |
T |
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| Q |
318 |
ttcattcat |
326 |
Q |
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| T |
32198756 |
ttcattcat |
32198748 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 48747818 - 48747871
Alignment:
| Q |
167 |
caagttttaaattagaattcgtgaatgagaatttttgtagttaaaggcaagttt |
220 |
Q |
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| T |
48747818 |
caagttttaaataagaattcgtgaatgagaactattgtatttattggcaagttt |
48747871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 4451016 - 4451091
Alignment:
| Q |
64 |
attaaaaacaaattagaaaagaaatagaatatacaccaagaacaaacgttgaggagaga-tcctccatttgatgctc |
139 |
Q |
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| T |
4451016 |
attaaaaacaaattataaaagaaataaaacatactctaagaataaaggttgacgagagactcctcc-tttgatgctc |
4451091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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