View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21330_high_10 (Length: 340)

Name: NF21330_high_10
Description: NF21330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21330_high_10
NF21330_high_10
[»] chr3 (5 HSPs)
chr3 (181-340)||(6131647-6131806)
chr3 (64-153)||(6131562-6131651)
chr3 (2-39)||(40247041-40247078)
chr3 (2-39)||(6131205-6131242)
chr3 (2-39)||(25418563-25418600)
[»] chr4 (2 HSPs)
chr4 (2-39)||(42786881-42786918)
chr4 (2-34)||(53276042-53276074)
[»] chr5 (2 HSPs)
chr5 (1-39)||(9689855-9689893)
chr5 (2-39)||(33656012-33656049)
[»] scaffold0113 (1 HSPs)
scaffold0113 (2-39)||(38867-38904)
[»] chr2 (2 HSPs)
chr2 (2-39)||(24776554-24776591)
chr2 (2-34)||(26601186-26601218)
[»] chr1 (2 HSPs)
chr1 (2-35)||(32588930-32588963)
chr1 (2-39)||(33025694-33025731)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 181 - 340
Target Start/End: Original strand, 6131647 - 6131806
Alignment:
Q  181 atttacgtgatcaaaattttaataaattttagagattattttaaaatttcgttaatcacatggagcaaatttgtgatttactacaaagggtaattctcaa 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6131647 atttacgtgatcaaaattttaataaattttagagattattttaaaatttcgttaatcacatggagcaaatttgtgatttactacaaagggtaattctcaa 6131746  T
Q  281 caagagctaacgagtaatgtttaactttttattgcagttgggattatattcaaattggtg 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6131747 caagagctaacgagtaatgtttaactttttattgcagttgggattatattcaaattggtg 6131806  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 6131562 - 6131651
Alignment:
Q  64 cctatttaagcaaagtccgactcgatctggcctactctcaccccaaatttctaccaactaagttacgcttagaagctcaaaactcattta 153  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6131562 cctatttaagcaaagtccgactcgatctgggctactctcacccctaatttctaccaactaagttacgcttagaagctcaaaactcattta 6131651  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 40247078 - 40247041
Alignment:
Q  2 agagacagtaaaatcttaaaagaaaaaacaatcataag 39  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  40247078 agagatagtaaaatcttaaaagaaaaaacaatcataag 40247041  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 6131205 - 6131242
Alignment:
Q  2 agagacagtaaaatcttaaaagaaaaaacaatcataag 39  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  6131205 agagatagtaaaatcttaaaagaaaaaacaatcctaag 6131242  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 25418600 - 25418563
Alignment:
Q  2 agagacagtaaaatcttaaaagaaaaaacaatcataag 39  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  25418600 agagatagtaaaatcttaaaagaaaaaacaatcctaag 25418563  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 42786918 - 42786881
Alignment:
Q  2 agagacagtaaaatcttaaaagaaaaaacaatcataag 39  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  42786918 agagatagtaaaatcttaaaagaaaaaacaatcataag 42786881  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 53276074 - 53276042
Alignment:
Q  2 agagacagtaaaatcttaaaagaaaaaacaatc 34  Q
    ||||| |||||||||||||||||||||||||||    
T  53276074 agagatagtaaaatcttaaaagaaaaaacaatc 53276042  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9689893 - 9689855
Alignment:
Q  1 cagagacagtaaaatcttaaaagaaaaaacaatcataag 39  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  9689893 cagagataataaaatcttaaaagaaaaaacaatcataag 9689855  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 33656012 - 33656049
Alignment:
Q  2 agagacagtaaaatcttaaaagaaaaaacaatcataag 39  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  33656012 agagatagtaaaatcttaaaagaaaaaacaatcctaag 33656049  T

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Target: scaffold0113 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 38867 - 38904
Alignment:
Q  2 agagacagtaaaatcttaaaagaaaaaacaatcataag 39  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  38867 agagatagtaaaatcttaaaagaaaaaacaatcctaag 38904  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 24776591 - 24776554
Alignment:
Q  2 agagacagtaaaatcttaaaagaaaaaacaatcataag 39  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  24776591 agagatagtaaaatcttaaaagaaaaaacaatcctaag 24776554  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 26601186 - 26601218
Alignment:
Q  2 agagacagtaaaatcttaaaagaaaaaacaatc 34  Q
    ||||| |||||||||||||||||||||||||||    
T  26601186 agagatagtaaaatcttaaaagaaaaaacaatc 26601218  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 32588930 - 32588963
Alignment:
Q  2 agagacagtaaaatcttaaaagaaaaaacaatca 35  Q
    ||||| ||||||||||||||||||||||||||||    
T  32588930 agagagagtaaaatcttaaaagaaaaaacaatca 32588963  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 33025731 - 33025694
Alignment:
Q  2 agagacagtaaaatcttaaaagaaaaaacaatcataag 39  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  33025731 agagatagtaaaatcttaaaagaaaacacaatcataag 33025694  T

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