View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21330_high_3 (Length: 539)

Name: NF21330_high_3
Description: NF21330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21330_high_3
NF21330_high_3
[»] chr8 (4 HSPs)
chr8 (1-535)||(24368817-24369345)
chr8 (370-464)||(38093662-38093756)
chr8 (372-459)||(45463314-45463401)
chr8 (373-437)||(29654909-29654973)
[»] chr7 (1 HSPs)
chr7 (1-464)||(24019559-24020029)
[»] chr1 (5 HSPs)
chr1 (71-345)||(18903047-18903321)
chr1 (266-345)||(14251487-14251566)
chr1 (244-432)||(24531788-24531983)
chr1 (254-345)||(42150410-42150501)
chr1 (396-435)||(27700008-27700047)
[»] chr2 (1 HSPs)
chr2 (124-338)||(10598449-10598665)
[»] chr6 (2 HSPs)
chr6 (266-367)||(32540669-32540770)
chr6 (243-345)||(27848287-27848389)
[»] chr5 (1 HSPs)
chr5 (228-444)||(41387274-41387498)
[»] scaffold0535 (1 HSPs)
scaffold0535 (243-348)||(9072-9177)


Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 24369345 - 24368817
Alignment:
Q  1 caacattcacattatggtagattctttcaatctttgtttcaaaaataattctcaaattgatcaggttgacagattcatcagatggaataatgataattat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24369345 caacattcacattatggtagattctttcaatctttgtttcaaaaataattctcaaattgatcaggttgacagattcattagatggaataatgataattat 24369246  T
Q  101 tcttgtgccattcttaatgtcgatggtagttgcatgggtacacccgtgcgagctggttttggtagaattatccaaaatagtgtcgaatactacttatcaa 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||     
T  24369245 tcttgtgtcattcttaatgtcgatggtagttgcatgggtacacccgtgcgagctggttttggtagaactatccgaaatagtgtcggatactacttatcag 24369146  T
Q  201 gtttttctggctgcattagtgtttcttctgacattctgtatattgagctttgtgctatctaccatgggcttattttggcaaaaagcttgaatataattga 300  Q
    ||||||||||||||||   |||||||| |||||| |       ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  24369145 gtttttctggctgcatcgatgtttcttttgacatcc-------tgagctttgtgctatctaccatgggcttatttt-gcaaaaagcttgaatataattga 24369054  T
Q  301 gcttgtttgctataccaactccttgcattgtatcaacctcctcaaggggccaccaatgagataccat--------tttcttgattcaagatgttaaggat 392  Q
    |||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||    
T  24369053 gcttgtttgctataccaa-tccttgcgttgtatcaacctcctcaaagggccaccaatgagataccatatttatgctttcttgattcaagatgttaaggat 24368955  T
Q  393 ttaattgggcaaagtaatgtcattgtttgtcatactcttagagaggaaaatcactgtgcagacttctctgcttctccacaactggagctaattcggatac 492  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||     | |  ||||||||||||||||||    
T  24368954 ttaattgggtaaagtaatgtcattgtttgtcatactcttagagagggaaatcactgtgcaaacttctttgct-----aaacttggagctaattcggatac 24368860  T
Q  493 tgagctgccctaacatgcctctcattcggatgaactcttgcat 535  Q
    |||||||| ||| |||||||||||| |||||||||||||||||    
T  24368859 tgagctgctctatcatgcctctcatccggatgaactcttgcat 24368817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 370 - 464
Target Start/End: Complemental strand, 38093756 - 38093662
Alignment:
Q  370 tcttgattcaagatgttaaggatttaattgggcaaagtaatgtcattgtttgtcatactcttagagaggaaaatcactgtgcagacttctctgct 464  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| || |||||| | |||| |||||| ||||    
T  38093756 tcttgattcaagatgttaaggatttaattgggttaagtaatgtcattgtttgtcatactcttagagtgggaaatcattttgcatacttctttgct 38093662  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 459
Target Start/End: Complemental strand, 45463401 - 45463314
Alignment:
Q  372 ttgattcaagatgttaaggatttaattgggcaaagtaatgtcattgtttgtcatactcttagagaggaaaatcactgtgcagacttct 459  Q
    ||||||||||| || ||||| || || |  ||||||||| | ||||||||||| ||||| |||||| ||||||| |||||||| ||||    
T  45463401 ttgattcaagacgtgaaggacttgatagaacaaagtaatattattgtttgtcacactctcagagagaaaaatcaatgtgcagatttct 45463314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 29654909 - 29654973
Alignment:
Q  373 tgattcaagatgttaaggatttaattgggcaaagtaatgtcattgtttgtcatactcttagagag 437  Q
    ||||||||||||| ||| |||| |||| ||||||||||| || | ||||||| ||||||| ||||    
T  29654909 tgattcaagatgtgaagaatttgattgagcaaagtaatgccagtatttgtcacactcttaaagag 29654973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 255; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 24020029 - 24019559
Alignment:
Q  1 caacattcacattatggtagattctttcaatctttgtttcaaaaataattctcaaattgatcaggttgacagattcatcagatggaataatgataattat 100  Q
    ||||||||||| ||||||||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  24020029 caacattcacagtatggtagattctttcaatatttggttcaaaaataattcccaaattgctcaggttgacagattcattagattgaataatgataattat 24019930  T
Q  101 tcttgtgccattcttaatgtcgatggtagttgcatgggtacacccgtgcgagctggttttggtagaattatccaaaatagtgtcgaatactacttatcaa 200  Q
     ||||| ||||||||||||||| |||||||||  ||| ||||||| | ||||||||||||||| ||||||||| ||||||||   ||||||| |||||||    
T  24019929 acttgtcccattcttaatgtcgctggtagttgattggatacaccctt-cgagctggttttggtggaattatccgaaatagtgcaaaatactatttatcaa 24019831  T
Q  201 gtttttctggctgcattagtgtttcttctgacattctgtatattgagctttgtgctatctaccatgggcttattttggcaaaaagcttgaatataattga 300  Q
     |||||||| |||||| | |||||||| ||||||  |||||  ||||||||  |||||||| || | ||||||||||||||||| |||||||||||||||    
T  24019830 atttttctgactgcatcaatgtttcttttgacatcttgtatgctgagctttacgctatctagcaggagcttattttggcaaaaatcttgaatataattga 24019731  T
Q  301 gcttgtttgctataccaactccttgcattgtatcaacctcctcaaggggccaccaatgagatacca--------ttttcttgattcaagatgttaaggat 392  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||        || |||||||||||||||||||||||    
T  24019730 gcttatttgctataccaactccttgcattgtatcaacctcctcaaggggccaccaacgagaaaccatgtttatgttgtcttgattcaagatgttaaggat 24019631  T
Q  393 ttaattgggcaaagtaatgtcattgtttgtcatactcttagagaggaaaatcactgtgcagacttctctgct 464  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| ||||    
T  24019630 ttaattgggcaacataatgtcattgtttgccatactcttagagagaaaaatcactgtgcggacttctttgct 24019559  T

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Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 71 - 345
Target Start/End: Original strand, 18903047 - 18903321
Alignment:
Q  71 agattcatcagatggaataatgataattattcttgtgccattcttaatgtcgatggtagttgcatgggtacacccgtgcgagctggttttggtagaatta 170  Q
    ||||| ||||| | ||||| |||||||||||||||  | || || |||||  |||||||||| ||| | || | |||| |||||||||||||| ||||||    
T  18903047 agatttatcaggttgaatagtgataattattcttgcacaatcctcaatgttaatggtagttgtatgagcaccctcgtgagagctggttttggtggaatta 18903146  T
Q  171 tccaaaatagtgtcgaatactacttatcaagtttttctggctgcattagtgtttcttctgacattctgtatattgagctttgtgctatctaccatgggct 270  Q
    |  | |||| | ||| ||| || |||||| || | || ||||  |||| || |||||||||||| ||| ||   ||||||    |||| ||  | |||||    
T  18903147 tttagaataatatcggatattatttatcaggtatctcaggctatattaatgattcttctgacatcctgcatgccgagcttcacactatatattaggggct 18903246  T
Q  271 tattttggcaaaaagcttgaatataattgagcttgtttgctataccaactccttgcattgtatcaacctcctcaa 345  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  18903247 tattttgacaaaaagcttgaatacaattgagcttgtttgctataccgactccttgcattgtataaacctcctcaa 18903321  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 345
Target Start/End: Original strand, 14251487 - 14251566
Alignment:
Q  266 gggcttattttggcaaaaagcttgaatataattgagcttgtttgctataccaactccttgcattgtatcaacctcctcaa 345  Q
    ||||| || |||||| |||||||||| |  ||||||||||||||||||| | ||| |||||||||||| |||||||||||    
T  14251487 gggctcatcttggcagaaagcttgaacactattgagcttgtttgctatatctacttcttgcattgtataaacctcctcaa 14251566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 432
Target Start/End: Complemental strand, 24531983 - 24531788
Alignment:
Q  244 tgagctttgtgctatctaccatgggcttattttggcaaaaagcttgaatataattgagcttgtttgctataccaactccttgcattgtatcaacctcctc 343  Q
    ||||||||  ||||| ||||||||| | |||||||| |||||||| |||||  ||||| |||||||||||||| ||||| | |||| ||| || ||||||    
T  24531983 tgagctttacgctatttaccatgggttcattttggcgaaaagctt-aatattgttgagtttgtttgctataccgactccctacattttataaaactcctc 24531885  T
Q  344 aaggggccaccaatgagataccat--------tttcttgattcaagatgttaaggatttaattgggcaaagtaatgtcattgtttgtcatactctta 432  Q
    || || ||  ||||| ||||||||        | ||||||| |||||||| |||||| | ||| ||||| ||||||| | ||||||||| |||||||    
T  24531884 aaaggaccgtcaatgggataccatgtttatgatgtcttgatccaagatgtgaaggatctgattaggcaaggtaatgtaactgtttgtcacactctta 24531788  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 345
Target Start/End: Complemental strand, 42150501 - 42150410
Alignment:
Q  254 gctatctaccatgggcttattttggcaaaaagcttgaatataattgagcttgtttgctataccaactccttgcattgtatcaacctcctcaa 345  Q
    ||||||||||| || ||||| |||| |||||  ||   ||| |||||| |||||||||| ||| |||||||||||||||||||||| |||||    
T  42150501 gctatctaccagggtcttatcttggtaaaaacattagctatcattgagtttgtttgctacaccgactccttgcattgtatcaaccttctcaa 42150410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 435
Target Start/End: Original strand, 27700008 - 27700047
Alignment:
Q  396 attgggcaaagtaatgtcattgtttgtcatactcttagag 435  Q
    |||| ||||||||||||| |||||||||||||||||||||    
T  27700008 attgagcaaagtaatgtcgttgtttgtcatactcttagag 27700047  T

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Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 124 - 338
Target Start/End: Original strand, 10598449 - 10598665
Alignment:
Q  124 tggtagttgcatgggtacacccgtgcgagctggttttggtagaattatccaaaatagtgtcgaatactacttatcaagtttttctggctgcattagtgtt 223  Q
    |||||||||  |||| || |||| | |||||||||||||| ||||||| | ||| | ||| | ||| || |||||| |||| |  ||||  |||| || |    
T  10598449 tggtagttgattgggcacccccgcgagagctggttttggtggaattattcgaaacaatgttggatattatttatcaggtttctgaggctatattaatgat 10598548  T
Q  224 tcttctgacattctgtatattgagctttgtgctatctaccatgggcttattttggcaaaaag--cttgaatataattgagcttgtttgctataccaactc 321  Q
    |||||||||||  |||||   ||||||   ||||| ||| | |||||||||||||||||||   |||||||||||||||||||||||| |||||| ||||    
T  10598549 tcttctgacatcatgtatgccgagcttcacgctatttactaggggcttattttggcaaaaaaaacttgaatataattgagcttgtttgatataccgactc 10598648  T
Q  322 cttgcattgtatcaacc 338  Q
    |||||||||||| ||||    
T  10598649 cttgcattgtataaacc 10598665  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 266 - 367
Target Start/End: Original strand, 32540669 - 32540770
Alignment:
Q  266 gggcttattttggcaaaaagcttgaatataattgagcttgtttgctataccaactccttgcattgtatcaacctcctcaaggggccaccaatgagatacc 365  Q
    |||||| | |||| ||||||||||||||||| ||| ||||||||||||||| |||| ||||||||  ||||||||||||| || ||  | ||||||||||    
T  32540669 gggcttgtattggaaaaaagcttgaatataactgatcttgtttgctataccgactcgttgcattgcgtcaacctcctcaaaggcccgactatgagatacc 32540768  T
Q  366 at 367  Q
    ||    
T  32540769 at 32540770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 345
Target Start/End: Complemental strand, 27848389 - 27848287
Alignment:
Q  243 ttgagctttgtgctatctaccatgggcttattttggcaaaaagcttgaatataattgagcttgtttgctataccaactccttgcattgtatcaacctcct 342  Q
    |||||||||  |||||||| || || ||||||||||| ||||||||| |||||| |||| | ||||||||| | |||||  ||| |||||| ||||| ||    
T  27848389 ttgagctttacgctatctatcagggtcttattttggctaaaagcttggatataactgagttagtttgctattctaactctctgctttgtataaaccttct 27848290  T
Q  343 caa 345  Q
    |||    
T  27848289 caa 27848287  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 444
Target Start/End: Original strand, 41387274 - 41387498
Alignment:
Q  228 ctgacattctgtatattgagctttgtgctatctaccatgggcttattttggcaaaaagcttgaatataattgagcttgtttgctataccaactccttgca 327  Q
    |||||||  |||||| | || ||| |||||||||| | || || ||| |||| |||||||| |||||||||||||| ||||||||  ||||||| |||||    
T  41387274 ctgacatcatgtatactaagttttttgctatctactagggtctaattatggctaaaagcttaaatataattgagctcgtttgctactccaactctttgca 41387373  T
Q  328 ttgtatcaacctcctcaaggggccaccaatgagataccattt--------tcttgattcaagatgttaaggatttaattgggcaaagtaatgtcattgtt 419  Q
     ||||||||||| || || ||  || ||| ||  |  ||| |        ||||||||||||| || ||||||||||||| ||| |  ||||||||||||    
T  41387374 ctgtatcaaccttcttaaaggttcaacaacgaagtttcatgtctatgtggtcttgattcaagacgtgaaggatttaattgagcagaccaatgtcattgtt 41387473  T
Q  420 tgtcatactcttagagaggaaaatc 444  Q
    |  ||||||||||||||||| ||||    
T  41387474 ttccatactcttagagaggataatc 41387498  T

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Target: scaffold0535 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 348
Target Start/End: Original strand, 9072 - 9177
Alignment:
Q  243 ttgagctttgtgctatctaccatgggcttattttggcaaaaagcttgaatataattgagcttgtttgctataccaactccttgcattgtatcaacctcct 342  Q
    |||||||||||||||||||||| || ||  ||||||| | || ||| |||||   ||| ||||| |||||||   |||| || |||||||||||||||||    
T  9072 ttgagctttgtgctatctaccagggcctagttttggctagaaacttaaatattgatgatcttgtctgctatattgactctttacattgtatcaacctcct 9171  T
Q  343 caaggg 348  Q
     |||||    
T  9172 gaaggg 9177  T

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