View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21330_high_4 (Length: 506)
Name: NF21330_high_4
Description: NF21330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21330_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 79 - 495
Target Start/End: Complemental strand, 11424369 - 11423939
Alignment:
| Q |
79 |
gtgataaactttcaagatgcaattaaagtaactatcagaaaacagaattaactataaaaatcattgactgctgacaactggaaaataattaactaactgg |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
11424369 |
gtgataaactttcaagatgcaattaaagtaactatcagaaaacagaattaactataaaaatcattgactactaacaactggaaaataattaactaactgg |
11424270 |
T |
|
| Q |
179 |
gcagtaa--------------acagaatttaccaacataaactctttcttgcaatacatgattgaaaaatactgttccaactgaatttattaatttacaa |
264 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11424269 |
gcagtaagcaacaatcagtaaacagaatttaccaacataaactcattcttgcaatacatgattgaaaaatactgttccaactgaatttattaatttacaa |
11424170 |
T |
|
| Q |
265 |
ataaaaatcatttgacgtgtaattttaaaagtattcatgctttttgtagaaatgtttctttaacagaattttcnnnnnnnnnttcattttctcatggaca |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
11424169 |
ataaaaatcatttgacgtgtaattttaaaagtattcatgctttttgtagaaatgtttctttaacagaattttcaaaaaaaaattcactttctcatggaca |
11424070 |
T |
|
| Q |
365 |
tcttttgatgtttacttcaactttcatttatcactatgcacacttagtttcactttagtgagatgcaacagtgagtctaatcttaaatttcaatttatta |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11424069 |
tcttttgatgtttacttcaactttcatttatcactatgcacacttagtttaactttagtgagatgcaacagtgagtctaatcttaaatttcaatttatta |
11423970 |
T |
|
| Q |
465 |
gtcactaaaagtgttttttattagggtctgt |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11423969 |
gtcactaaaagtgttttttattagggtctgt |
11423939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 79 - 495
Target Start/End: Complemental strand, 11429120 - 11428702
Alignment:
| Q |
79 |
gtgataaactttcaagatgcaattaaagtaactatcagaaaacagaattaactataaaaatcattgactgctgacaactggaaaataattaactaactgg |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||| || | |||||||||||||| || || || |||||||||||||||||| |
|
|
| T |
11429120 |
gtgataaactttcaagatgcaattaaagtaactatcaacaaacataattcacaaaaaaaatcattgactactaacgaccaaaaaataattaactaactga |
11429021 |
T |
|
| Q |
179 |
gcagtaa--------------acagaatttaccaacataaactctttcttgcaatacatgattgaaaaatactgttccaactgaatttattaatttacaa |
264 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||| |
|
|
| T |
11429020 |
gcagtaagcaacaatcagtaaacataatttaccaacataagctcattcttgcaatacatgattgaaaaatactgtttcaactgatttttttaatatacaa |
11428921 |
T |
|
| Q |
265 |
ataaaaatcatttgacgtgtaattttaaaagtattcatgctttttgtagaaatgtttctttaacagaattttcnnnnnnnnnttcattttctcatggaca |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |
|
|
| T |
11428920 |
ataaaaatcatttgacgtgtaattttaaaagtattcaggctttttgtagaaatgtttatttaacagaattttc-aaacatttttcactttctcatggaca |
11428822 |
T |
|
| Q |
365 |
tcttttgatgtttacttcaactttcattta--tcactatgcacacttagtttcactttagtgagatgcaacagtgagtctaatcttaaatttcaatttat |
462 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
11428821 |
tcttttgaagtttacttcaactttcatttaatgcactgtgcacgcttagtttcacttt-------------agtcagtctaatcttaaattttaatttat |
11428735 |
T |
|
| Q |
463 |
tagtcactaaaagtgttttttattagggtctgt |
495 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |
|
|
| T |
11428734 |
gagtcactaaaagtgctttttattagggtctgt |
11428702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 180 - 337
Target Start/End: Complemental strand, 11438772 - 11438615
Alignment:
| Q |
180 |
cagtaaacagaatttaccaacataaactctttcttgcaatacatgattgaaaaatactgttccaactgaatttattaatttacaaataaaaatcatttga |
279 |
Q |
| |
|
|||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |||||| |
|
|
| T |
11438772 |
cagtaaacagaattgactaagataaactcattcttgcaatacatgattgaaaaatactgttccaactgcactttttaatttacaaataaaaattatttga |
11438673 |
T |
|
| Q |
280 |
cgtgtaattttaaaagtattcatgctttttgtagaaatgtttctttaacagaattttc |
337 |
Q |
| |
|
| ||||||||| ||| |||||| ||||| |||||||||| || |||||||||||||| |
|
|
| T |
11438672 |
catgtaattttgaaattattcaggctttatgtagaaatgattagttaacagaattttc |
11438615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 11438926 - 11438829
Alignment:
| Q |
79 |
gtgataaactttcaagatgcaattaaagtaactatcagaaaacagaattaactataaaaatcattgactgctgacaactggaaaataattaactaactg |
177 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || || |||| ||||||||||||| |
|
|
| T |
11438926 |
gtgataaa-tttcaagatgcaattaaagtaactatcaacaaacagaattaactataaaaatcattgacttctaacgaccaaaaaacaattaactaactg |
11438829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University