View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21330_high_6 (Length: 446)

Name: NF21330_high_6
Description: NF21330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21330_high_6
NF21330_high_6
[»] chr3 (14 HSPs)
chr3 (9-431)||(5448430-5448856)
chr3 (216-360)||(5457355-5457498)
chr3 (127-161)||(34610737-34610771)
chr3 (123-160)||(18405763-18405800)
chr3 (134-164)||(22667515-22667545)
chr3 (134-164)||(22724154-22724184)
chr3 (123-161)||(25447176-25447214)
chr3 (128-161)||(16072972-16073005)
chr3 (131-164)||(20170642-20170675)
chr3 (123-164)||(24085266-24085307)
chr3 (123-164)||(31365116-31365157)
chr3 (100-164)||(39980806-39980871)
chr3 (132-164)||(26878310-26878342)
chr3 (129-161)||(33405123-33405155)
[»] chr6 (7 HSPs)
chr6 (123-164)||(35069540-35069581)
chr6 (97-164)||(10645313-10645381)
chr6 (130-164)||(4163261-4163295)
chr6 (130-164)||(4224882-4224916)
chr6 (124-162)||(34430404-34430442)
chr6 (128-161)||(21405085-21405118)
chr6 (124-164)||(34430817-34430856)
[»] chr1 (15 HSPs)
chr1 (123-161)||(15784418-15784456)
chr1 (123-161)||(33204325-33204363)
chr1 (123-164)||(2295197-2295238)
chr1 (132-164)||(41505784-41505816)
chr1 (109-164)||(13810085-13810140)
chr1 (130-164)||(2295299-2295333)
chr1 (134-164)||(28837281-28837311)
chr1 (109-163)||(29904838-29904892)
chr1 (123-161)||(38116008-38116046)
chr1 (131-164)||(14385721-14385754)
chr1 (131-164)||(37842284-37842317)
chr1 (128-161)||(39976141-39976174)
chr1 (97-161)||(50644186-50644251)
chr1 (123-155)||(1684036-1684068)
chr1 (128-156)||(7107448-7107476)
[»] chr8 (11 HSPs)
chr8 (123-164)||(1058005-1058046)
chr8 (131-164)||(30251382-30251415)
chr8 (128-161)||(38602433-38602466)
chr8 (123-164)||(43717862-43717903)
chr8 (109-161)||(35534544-35534596)
chr8 (123-162)||(9130249-9130288)
chr8 (123-164)||(36963282-36963323)
chr8 (123-164)||(38648452-38648493)
chr8 (132-164)||(11376813-11376845)
chr8 (128-164)||(40859711-40859747)
chr8 (97-160)||(41589660-41589724)
[»] chr7 (7 HSPs)
chr7 (128-161)||(19302494-19302527)
chr7 (134-164)||(11619086-11619116)
chr7 (123-160)||(18765385-18765422)
chr7 (128-161)||(33266417-33266450)
chr7 (97-160)||(18962515-18962579)
chr7 (123-163)||(27863654-27863694)
chr7 (128-164)||(46078205-46078241)
[»] chr5 (9 HSPs)
chr5 (123-164)||(15015944-15015985)
chr5 (123-161)||(9202679-9202717)
chr5 (128-162)||(10640059-10640093)
chr5 (123-161)||(12425674-12425712)
chr5 (130-160)||(15246941-15246971)
chr5 (123-161)||(35445775-35445813)
chr5 (120-161)||(4625827-4625868)
chr5 (128-161)||(39594913-39594946)
chr5 (128-164)||(16937811-16937847)
[»] chr4 (13 HSPs)
chr4 (128-161)||(27043761-27043794)
chr4 (123-164)||(54426144-54426185)
chr4 (123-161)||(15173234-15173272)
chr4 (123-161)||(17822796-17822834)
chr4 (123-164)||(8705042-8705083)
chr4 (124-161)||(29388716-29388753)
chr4 (128-161)||(42403954-42403987)
chr4 (123-164)||(44797981-44798022)
chr4 (108-164)||(18815109-18815165)
chr4 (128-160)||(21731588-21731620)
chr4 (132-164)||(25571369-25571401)
chr4 (128-164)||(35571559-35571595)
chr4 (128-164)||(55437182-55437218)
[»] chr2 (11 HSPs)
chr2 (123-164)||(3312178-3312219)
chr2 (97-161)||(27317453-27317518)
chr2 (128-164)||(15305780-15305816)
chr2 (121-161)||(18179048-18179088)
chr2 (123-161)||(29628673-29628711)
chr2 (123-161)||(30331852-30331890)
chr2 (123-160)||(1626001-1626038)
chr2 (123-164)||(7928226-7928267)
chr2 (135-164)||(40837365-40837394)
chr2 (123-164)||(42659139-42659180)
chr2 (100-164)||(44590101-44590166)


Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 9 - 431
Target Start/End: Original strand, 5448430 - 5448856
Alignment:
Q  9 catcagctcaatcaggggttatttccatagtaaaagataaaataaagtttt-ttgtatagttataagttgtcttcataagcgaaaacatagttgttttca 107  Q
    |||||| ||||  |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5448430 catcaggtcaactaggggttatttctatagtaaaagataaaataaagtttttttgtatagttataagttgtcttcataagcgaaaacatagttgttttca 5448529  T
Q  108 tagttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataagccacttcttgtccatatgaaaatgatgtaaggtnnnnnnnnnnnnn 207  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
T  5448530 tagttctctaatacagtcttacaaaacttatgtcagtagataagctcaaataagccacttcttgtccatatgaaaatgatgtaaggtacaaacaacaaca 5448629  T
Q  208 nnnnnnngaaga---agcatgtgatatagtacaaattaaagtcttattcaactttaagttatatagagttgcctgtgaaatggggtatttggattgaaac 304  Q
            ||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5448630 acaacaacaagaagaagcatgtgatatagtacaaattaaagtcttattcaattttaagttatatagagttgcctgtgaaatggggtatttggattgaaac 5448729  T
Q  305 atcaacaataacaacaatgactattattactagaaacaacaacttatcataaacgtatgcatgtagagacctcaaccatacagtgatcattgaatttgta 404  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5448730 atcaacaataactacaatgactattattactagaaacaacaacttatcataaacgtatgcatgtagagacctcaaccatacagtgatcattgaattggta 5448829  T
Q  405 tgtagtgtataacacaagcgaattttc 431  Q
    ||||||||||||||||| |||| ||||    
T  5448830 tgtagtgtataacacaaacgaaatttc 5448856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 216 - 360
Target Start/End: Original strand, 5457355 - 5457498
Alignment:
Q  216 aagaagcatgtgatatagtacaaattaaagtcttattcaactttaagttatatagagttgcctgtgaaatggggtatttggattgaaacatcaacaataa 315  Q
    ||||||| |||||| ||  ||||||||||||||||||||||||||||| |||  ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  5457355 aagaagcctgtgatgtaaaacaaattaaagtcttattcaactttaagtcata--gagttacctgtgaaatgggttatttggattgaaacatcaacaataa 5457452  T
Q  316 caac-aatgactattattactagaaacaacaacttatcataaacgt 360  Q
    |||| |||||||||| ||||||||||||||||||| ||||||||||    
T  5457453 caacaaatgactattcttactagaaacaacaacttctcataaacgt 5457498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 34610771 - 34610737
Alignment:
Q  127 tacaaaacttatgtcagtagataagctcaaataag 161  Q
    |||||||||||||||||||||||||||||||||||    
T  34610771 tacaaaacttatgtcagtagataagctcaaataag 34610737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 18405800 - 18405763
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataa 160  Q
    |||| |||||||||||||||||||||||||||||||||    
T  18405800 gtctcacaaaacttatgtcagtagataagctcaaataa 18405763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 22667515 - 22667545
Alignment:
Q  134 cttatgtcagtagataagctcaaataagcca 164  Q
    |||||||||||||||||||||||||||||||    
T  22667515 cttatgtcagtagataagctcaaataagcca 22667545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 22724154 - 22724184
Alignment:
Q  134 cttatgtcagtagataagctcaaataagcca 164  Q
    |||||||||||||||||||||||||||||||    
T  22724154 cttatgtcagtagataagctcaaataagcca 22724184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 25447214 - 25447176
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  25447214 gtctcacaaaacttatgtcagtagataaactcaaataag 25447176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 16073005 - 16072972
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataag 161  Q
    ||||||||||||||| ||||||||||||||||||    
T  16073005 acaaaacttatgtcattagataagctcaaataag 16072972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 20170675 - 20170642
Alignment:
Q  131 aaacttatgtcagtagataagctcaaataagcca 164  Q
    |||||||||||| |||||||||||||||||||||    
T  20170675 aaacttatgtcactagataagctcaaataagcca 20170642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 24085307 - 24085266
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||| |||||||||||| | ||||||||||||||||||||||    
T  24085307 gtctcacaaaacttatgccggtagataagctcaaataagcca 24085266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 31365157 - 31365116
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||| |||||||||||| || |||||||||||||||||||||    
T  31365157 gtctcacaaaacttatgccaatagataagctcaaataagcca 31365116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 39980806 - 39980871
Alignment:
Q  100 tgttttcata-gttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||||||||| ||||||| | || |||| ||||||||||||  |||||||||||||||| ||||||    
T  39980806 tgttttcataagttctcttaaacagtctcacaaaacttatgctagtagataagctcaaacaagcca 39980871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 26878310 - 26878342
Alignment:
Q  132 aacttatgtcagtagataagctcaaataagcca 164  Q
    ||||||||||||||||||||||| |||||||||    
T  26878310 aacttatgtcagtagataagctcgaataagcca 26878342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 33405155 - 33405123
Alignment:
Q  129 caaaacttatgtcagtagataagctcaaataag 161  Q
    |||||||||||||||||||||| ||||||||||    
T  33405155 caaaacttatgtcagtagataaactcaaataag 33405123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 35069581 - 35069540
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35069581 gtcttacaaaacttatgtcagtagataagctcaaataagcca 35069540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 10645381 - 10645313
Alignment:
Q  97 agttgttttcata-gttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    ||||||||||||| ||||||  | || |||||||||||||||||||| ||||||| ||||||| |||||    
T  10645381 agttgttttcataagttctcccaaacagtcttacaaaacttatgtcattagataacctcaaattagcca 10645313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 4163261 - 4163295
Alignment:
Q  130 aaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||||||||| ||||||||||||||||||||||||    
T  4163261 aaaacttatgccagtagataagctcaaataagcca 4163295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 4224882 - 4224916
Alignment:
Q  130 aaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||||||||| ||||||||||||||||||||||||    
T  4224882 aaaacttatgccagtagataagctcaaataagcca 4224916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 34430442 - 34430404
Alignment:
Q  124 tcttacaaaacttatgtcagtagataagctcaaataagc 162  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  34430442 tcttataaaacttatgtcactagataagctcaaataagc 34430404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 21405118 - 21405085
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataag 161  Q
    |||||||||||||||||| |||||||||||||||    
T  21405118 acaaaacttatgtcagtatataagctcaaataag 21405085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 34430817 - 34430856
Alignment:
Q  124 tcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  34430817 tcttacaaaacttat-tcagttgataagctcaaataagcca 34430856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 15784418 - 15784456
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  15784418 gtcttacaaaacttatgttagtagataagctcaaataag 15784456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 33204363 - 33204325
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  33204363 gtctcacaaaacttatgtcagtagataagctcaaataag 33204325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 2295197 - 2295238
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  2295197 gtctcacaaaacttatgccagtagataagctcaaataagcca 2295238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 41505784 - 41505816
Alignment:
Q  132 aacttatgtcagtagataagctcaaataagcca 164  Q
    |||||||||||||||||||||||||||||||||    
T  41505784 aacttatgtcagtagataagctcaaataagcca 41505816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 13810085 - 13810140
Alignment:
Q  109 agttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||||||||| |  |||| |||||||||| |||||||||||||| |||||||||||    
T  13810085 agttctctaaaagagtctcacaaaacttacgtcagtagataagcacaaataagcca 13810140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 164
Target Start/End: Original strand, 2295299 - 2295333
Alignment:
Q  130 aaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||||||| ||||||||||||||||||||||||||    
T  2295299 aaaacttaagtcagtagataagctcaaataagcca 2295333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 28837311 - 28837281
Alignment:
Q  134 cttatgtcagtagataagctcaaataagcca 164  Q
    |||||||||||||||||||||||||||||||    
T  28837311 cttatgtcagtagataagctcaaataagcca 28837281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 29904838 - 29904892
Alignment:
Q  109 agttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataagcc 163  Q
    |||||||| | || |||| ||||||||||||  ||||||||||||||||||||||    
T  29904838 agttctctcaaacagtctcacaaaacttatgcaagtagataagctcaaataagcc 29904892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 38116046 - 38116008
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  38116046 gtctcacaaaacttacgtcagtagataagctcaaataag 38116008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 14385754 - 14385721
Alignment:
Q  131 aaacttatgtcagtagataagctcaaataagcca 164  Q
    ||||||||| ||||||||||||||||||||||||    
T  14385754 aaacttatgccagtagataagctcaaataagcca 14385721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 37842317 - 37842284
Alignment:
Q  131 aaacttatgtcagtagataagctcaaataagcca 164  Q
    |||||||| |||||||||||||||||||||||||    
T  37842317 aaacttatatcagtagataagctcaaataagcca 37842284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 39976174 - 39976141
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataag 161  Q
    ||||||||||||||||||||||| ||||||||||    
T  39976174 acaaaacttatgtcagtagataatctcaaataag 39976141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 50644251 - 50644186
Alignment:
Q  97 agttgttttcata-gttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    ||||||||||||| ||||||  | || |||| ||||||| ||||| ||||||||||||||||||||    
T  50644251 agttgttttcataagttctcccaaacagtctcacaaaacatatgttagtagataagctcaaataag 50644186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 1684068 - 1684036
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctca 155  Q
    |||| ||||||||||||||||||||||||||||    
T  1684068 gtctcacaaaacttatgtcagtagataagctca 1684036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 156
Target Start/End: Complemental strand, 7107476 - 7107448
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaa 156  Q
    |||||||||||||||||||||||||||||    
T  7107476 acaaaacttatgtcagtagataagctcaa 7107448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 1058046 - 1058005
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||| ||||||||||||| |||||||||||||||||||||||    
T  1058046 gtctcacaaaacttatgtaagtagataagctcaaataagcca 1058005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 30251415 - 30251382
Alignment:
Q  131 aaacttatgtcagtagataagctcaaataagcca 164  Q
    ||||||||||||||||||||||||||||||||||    
T  30251415 aaacttatgtcagtagataagctcaaataagcca 30251382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 38602433 - 38602466
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataag 161  Q
    ||||||||||||||||||||||||||||||||||    
T  38602433 acaaaacttatgtcagtagataagctcaaataag 38602466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 43717903 - 43717862
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  43717903 gtctcacaaaacttatgtcaatagataagctcaaataagcca 43717862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 35534596 - 35534544
Alignment:
Q  109 agttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    |||||||| | || |||| ||||||||||||| ||||||||||||||||||||    
T  35534596 agttctctcaaacagtctcacaaaacttatgttagtagataagctcaaataag 35534544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 9130288 - 9130249
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagc 162  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  9130288 gtctcacaaaacttatgccagtagataagctcaaataagc 9130249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 36963323 - 36963282
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||| |||||||||||| |||||||| |||||||||||||||    
T  36963323 gtctcacaaaacttatgccagtagattagctcaaataagcca 36963282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 38648452 - 38648493
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||| ||||||||||||||||||||||| || ||||||||||    
T  38648452 gtctcacaaaacttatgtcagtagataatcttaaataagcca 38648493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 11376813 - 11376845
Alignment:
Q  132 aacttatgtcagtagataagctcaaataagcca 164  Q
    ||||||| |||||||||||||||||||||||||    
T  11376813 aacttatatcagtagataagctcaaataagcca 11376845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 40859747 - 40859711
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataagcca 164  Q
    ||||||||||||| || ||||||||||||||||||||    
T  40859747 acaaaacttatgttagcagataagctcaaataagcca 40859711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 41589660 - 41589724
Alignment:
Q  97 agttgttttcata-gttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataa 160  Q
    ||||||||||||| |||||| || || |||| | ||| |||||||||||||| ||||||||||||    
T  41589660 agttgttttcataagttctccaaaacagtctcaaaaagcttatgtcagtagacaagctcaaataa 41589724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 19302527 - 19302494
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataag 161  Q
    ||||||||||||||||||||||||||||||||||    
T  19302527 acaaaacttatgtcagtagataagctcaaataag 19302494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 11619116 - 11619086
Alignment:
Q  134 cttatgtcagtagataagctcaaataagcca 164  Q
    |||||||||||||||||||||||||||||||    
T  11619116 cttatgtcagtagataagctcaaataagcca 11619086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 18765385 - 18765422
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataa 160  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  18765385 gtctcacaaaacttatgtcaatagataagctcaaataa 18765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 33266450 - 33266417
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataag 161  Q
    |||||||||||||| |||||||||||||||||||    
T  33266450 acaaaacttatgtcggtagataagctcaaataag 33266417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 18962579 - 18962515
Alignment:
Q  97 agttgttttcata-gttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataa 160  Q
    ||||| ||||||| |||||| || || |||| |||||||||||||||||||||||| || |||||    
T  18962579 agttggtttcataagttctccaaaacagtctaacaaaacttatgtcagtagataagatcgaataa 18962515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 27863694 - 27863654
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcc 163  Q
    |||| |||||||||||| |||| ||||||||||||||||||    
T  27863694 gtctcacaaaacttatgccagtggataagctcaaataagcc 27863654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 46078205 - 46078241
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataagcca 164  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  46078205 acaaaacttatgtcaatagataagctaaaataagcca 46078241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 15015944 - 15015985
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||| ||||| |||||||||||||||||||||||||||||||    
T  15015944 gtctcacaaagcttatgtcagtagataagctcaaataagcca 15015985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 9202717 - 9202679
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  9202717 gtcttacaaaacttatgccaggagataagctcaaataag 9202679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 162
Target Start/End: Original strand, 10640059 - 10640093
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataagc 162  Q
    ||||||||||||||||||||||| |||||||||||    
T  10640059 acaaaacttatgtcagtagataaactcaaataagc 10640093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 12425674 - 12425712
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  12425674 gtctcacaaaacttatgacagtagataagctcaaataag 12425712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 160
Target Start/End: Original strand, 15246941 - 15246971
Alignment:
Q  130 aaaacttatgtcagtagataagctcaaataa 160  Q
    |||||||||||||||||||||||||||||||    
T  15246941 aaaacttatgtcagtagataagctcaaataa 15246971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 35445813 - 35445775
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  35445813 gtctcacaaaacttatgtcagtagataaactcaaataag 35445775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 4625827 - 4625868
Alignment:
Q  120 acggtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    |||||| |||||||||||| || |||||||||||||||||||    
T  4625827 acggtcctacaaaacttatttccgtagataagctcaaataag 4625868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 39594913 - 39594946
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataag 161  Q
    |||||||||||||| |||||||||||||||||||    
T  39594913 acaaaacttatgtcggtagataagctcaaataag 39594946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 16937847 - 16937811
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataagcca 164  Q
    ||||||||||||  |||||||||||||||||||||||    
T  16937847 acaaaacttatgctagtagataagctcaaataagcca 16937811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 27043794 - 27043761
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataag 161  Q
    ||||||||||||||||||||||||||||||||||    
T  27043794 acaaaacttatgtcagtagataagctcaaataag 27043761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 54426144 - 54426185
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  54426144 gtctcacaaaacttatgccagtagataagctcaaataagcca 54426185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 15173272 - 15173234
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  15173272 gtctcacaaaacttatgtcagtagataagttcaaataag 15173234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 17822834 - 17822796
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  17822834 gtctcacagaacttatgtcagtagataagctcaaataag 17822796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 8705042 - 8705083
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||| ||||||||||||||| ||||||||||||||| |||||    
T  8705042 gtctcacaaaacttatgtcaatagataagctcaaatgagcca 8705083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 29388716 - 29388753
Alignment:
Q  124 tcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  29388716 tcttacaaaacttatgttagtagataaggtcaaataag 29388753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 161
Target Start/End: Complemental strand, 42403987 - 42403954
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataag 161  Q
    ||||||||||||||||| ||||||||||||||||    
T  42403987 acaaaacttatgtcagttgataagctcaaataag 42403954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 44797981 - 44798022
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||| |||||||||||||||||||||||||| |||| |||||    
T  44797981 gtctcacaaaacttatgtcagtagataagcttaaatcagcca 44798022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 18815109 - 18815165
Alignment:
Q  108 tagttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    ||||||||| | || |||| ||||||||||||  ||||| |||||||||||||||||    
T  18815109 tagttctctcaaacagtctcacaaaacttatgctagtaggtaagctcaaataagcca 18815165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 21731620 - 21731588
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataa 160  Q
    |||||||||||||||||||||| ||||||||||    
T  21731620 acaaaacttatgtcagtagatatgctcaaataa 21731588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 25571369 - 25571401
Alignment:
Q  132 aacttatgtcagtagataagctcaaataagcca 164  Q
    ||||||||||||||||||| |||||||||||||    
T  25571369 aacttatgtcagtagataaactcaaataagcca 25571401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 35571595 - 35571559
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataagcca 164  Q
    ||||||||||||  |||||||||||||||||||||||    
T  35571595 acaaaacttatgctagtagataagctcaaataagcca 35571559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 55437182 - 55437218
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||||||||||| |||||||||| |||||||||||||    
T  55437182 acaaaacttatggcagtagataaactcaaataagcca 55437218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 3312178 - 3312219
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  3312178 gtctcacaaaacttacgtcagtagataagctcaaataagcca 3312219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 27317453 - 27317518
Alignment:
Q  97 agttgttttcata-gttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    ||||||||||||| ||||||| | || |||| | |||||||||||| |||||||||||||||||||    
T  27317453 agttgttttcataagttctctcaaacagtctcataaaacttatgtcggtagataagctcaaataag 27317518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 15305780 - 15305816
Alignment:
Q  128 acaaaacttatgtcagtagataagctcaaataagcca 164  Q
    ||||||||||||||| |||||||||||||||||||||    
T  15305780 acaaaacttatgtcaatagataagctcaaataagcca 15305816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 18179048 - 18179088
Alignment:
Q  121 cggtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  18179048 cggtctcacaaaacttatgttagtagataagctcaaataag 18179088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 29628711 - 29628673
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  29628711 gtctcacaaaacttatgacagtagataagctcaaataag 29628673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 30331852 - 30331890
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataag 161  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  30331852 gtctcacaaaacttatgtcagtagataagctgaaataag 30331890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 160
Target Start/End: Original strand, 1626001 - 1626038
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataa 160  Q
    |||||||||||||||||||||  |||||||||||||||    
T  1626001 gtcttacaaaacttatgtcaggggataagctcaaataa 1626038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 7928267 - 7928226
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||| ||| ||||||||||| |||||||||||||||||||||    
T  7928267 gtctcacacaacttatgtcaatagataagctcaaataagcca 7928226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 40837394 - 40837365
Alignment:
Q  135 ttatgtcagtagataagctcaaataagcca 164  Q
    ||||||||||||||||||||||||||||||    
T  40837394 ttatgtcagtagataagctcaaataagcca 40837365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 42659180 - 42659139
Alignment:
Q  123 gtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||| |||||||||||| ||||| ||||||||||||||||||    
T  42659180 gtctcacaaaacttatgccagtaaataagctcaaataagcca 42659139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 44590101 - 44590166
Alignment:
Q  100 tgttttcata-gttctctaatacggtcttacaaaacttatgtcagtagataagctcaaataagcca 164  Q
    |||||||||| ||||| | | ||||||| ||||||||||||||  ||||||| |||||||||||||    
T  44590101 tgttttcataagttctttcaaacggtctcacaaaacttatgtctatagataaactcaaataagcca 44590166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University