View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21330_high_7 (Length: 393)
Name: NF21330_high_7
Description: NF21330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21330_high_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 46790684 - 46790299
Alignment:
| Q |
8 |
tttggtgtttagctctaacctctaaagttggattttcttttgtttttcagaaacattcaagctaagagtagaacagggaaggacatatcttctacgtgtt |
107 |
Q |
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| T |
46790684 |
tttgatgtttagctctaacctctaaagttggattttcttttctttttcagaaacattcaagctaagagtagaacagggaaggacatatcttctacgtgtt |
46790585 |
T |
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| Q |
108 |
gttaatgctgcaatgaatctcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctatgtacacaaaaccaatgacaagag |
207 |
Q |
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| T |
46790584 |
gttaatgctgcaatgaatctcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctatgtacacaaaaccaatgacgagag |
46790485 |
T |
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| Q |
208 |
attacatttgcatatcaccaggacaaacaatggatgtattgttgcatgccaaccaagaacctagtcactactatatggctgcaagagcatattcaagtga |
307 |
Q |
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| T |
46790484 |
attacatttgcatatcaccaggacaaacaatggatgtattgttacatgccaaccaagaacctagtcactactatatggctgcaagagcatattcaagtgc |
46790385 |
T |
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| Q |
308 |
agcaggattagagtttgataatactacatccactggtatagtacaatacagtgggattcatacaccactttcaactccttcattac |
393 |
Q |
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| T |
46790384 |
agcaggattagagtttgataataccacagccactggtatagtacaatacagttggagtcatacaccactttcaactccttcattac |
46790299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 27 - 393
Target Start/End: Complemental strand, 46783223 - 46782854
Alignment:
| Q |
27 |
ctctaaagttggattttcttttgtttttcagaaacattcaagctaagagtagaacagggaaggacatatcttctacgtgttgttaatgctgcaatgaatc |
126 |
Q |
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| T |
46783223 |
ctctaaagttggattttcttttctttttcagaaacattcaagctaagagtagaacagggaaggacatatcttctacgtgttgttaatgctgcaatgaatc |
46783124 |
T |
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| Q |
127 |
tcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctatgtacacaaaaccaatgacaagagattacatttgcatatcacc |
226 |
Q |
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| T |
46783123 |
tcattctctttttctcaatttctaaacataaactcactgttgttggtgctgatgctatgtacacaaaaccaatgacgagagattacatttgcatatcacc |
46783024 |
T |
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| Q |
227 |
aggacaaacaatggatgtattgttgcatgccaaccaagaacctagtcactactatatggctgcaagagcatattcaagtg---aagcaggattagagttt |
323 |
Q |
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| T |
46783023 |
aggacaaacaatggatgtattgttacatgccaaccaagaacctagtcactactatatggctgcaagagcatattcaactgataacgcaagagtagagttt |
46782924 |
T |
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| Q |
324 |
gataatactacatccactggtatagtacaatacagtgggattcatacaccactttcaactccttcattac |
393 |
Q |
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| T |
46782923 |
gataacaccacaaccactgctatagtgcaatacagagagagttatactccaatttcaacttcttcattac |
46782854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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