View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21330_high_8 (Length: 365)
Name: NF21330_high_8
Description: NF21330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21330_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 5690935 - 5691287
Alignment:
| Q |
1 |
caaaccactctcagatgttgaaaatgacaatgaaaaatcactcaagaagaggttgagacaaagtggcattgatccaaacagtcacaaaccactctcagag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5690935 |
caaaccactctcagatgttgaaaatgacaatgaaaaatcactcaagaagaggttgagacaaagtggcattgatccaaacagtcacaaaccactctcagag |
5691034 |
T |
|
| Q |
101 |
gttgaaaatgacaatgaaaaattactcacatccaacaaaaccaatcaaatataggaatttctgaatatccaaatgcatctatttgtttcacaccaacttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5691035 |
gttgaaaatgacaatgaaaaattactcacatccaacaaaaccaatcaaatataggaatttctgaatatccaaatgcatctatttgtttcacaccaacttc |
5691134 |
T |
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| Q |
201 |
aacttcttcacaaattatgtcagatacaaattctgtaaactccaaatgcaaggacatgcattgttataatgcaatcaaagtaaactcagtaaacccaaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5691135 |
aacttcttcacaaattatgtcagatacaaattctgtaaacttcaaatgcaaggacatgcattgttataatgcaatcaaagtaaactcagtaaacccaaca |
5691234 |
T |
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| Q |
301 |
gtcaatttccttaatatataaaatcttatcaatagcagcaagaatgtcctctc |
353 |
Q |
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| T |
5691235 |
gtcaatttccttaatatataaaatcttatcaatagcagcaagaatgtcctctc |
5691287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 5690920 - 5690978
Alignment:
| Q |
70 |
tgatccaaacagtcacaaaccactctcagaggttgaaaatgacaatgaaaaattactca |
128 |
Q |
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| T |
5690920 |
tgatccaaaaactcacaaaccactctcagatgttgaaaatgacaatgaaaaatcactca |
5690978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 37963129 - 37963237
Alignment:
| Q |
41 |
ctcaagaagaggttgagacaaagtggcattgatccaaacagtcacaaaccactctcagaggttgaaaatgacaatgaaaaattactcacatccaacaaaa |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37963129 |
ctcaagaagaggttgagacaaagtggcattgatccaaacacacacaaaccactctctgaggttgaaaatgacaatgaaaaatcactcacatccaacaaaa |
37963228 |
T |
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| Q |
141 |
ccaatcaaa |
149 |
Q |
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||||||||| |
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| T |
37963229 |
ccaatcaaa |
37963237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 37963431 - 37963526
Alignment:
| Q |
144 |
atcaaatataggaatttctgaatatccaaatgcatc---tatttgtttcacaccaacttcaacttcttcacaaattatgtcagatacaaattctgt |
236 |
Q |
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|||||| ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37963431 |
atcaaacatagggatttctgaaaatccaaatgcatcatctatttgtttcacaccaacttcaacttcttcacaaattatgtcagatacaaattctgt |
37963526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37963173 - 37963216
Alignment:
| Q |
1 |
caaaccactctcagatgttgaaaatgacaatgaaaaatcactca |
44 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||| |
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| T |
37963173 |
caaaccactctctgaggttgaaaatgacaatgaaaaatcactca |
37963216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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