View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21330_low_1 (Length: 317)

Name: NF21330_low_1
Description: NF21330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21330_low_1
NF21330_low_1
[»] chr5 (2 HSPs)
chr5 (1-316)||(39184736-39185051)
chr5 (174-311)||(8730292-8730427)
[»] chr1 (4 HSPs)
chr1 (163-312)||(42373538-42373686)
chr1 (47-312)||(17032753-17033026)
chr1 (159-314)||(19597952-19598108)
chr1 (161-229)||(41919898-41919966)
[»] chr4 (2 HSPs)
chr4 (155-272)||(16501182-16501300)
chr4 (161-229)||(30963879-30963947)
[»] chr2 (4 HSPs)
chr2 (154-280)||(31902910-31903036)
chr2 (125-280)||(39339357-39339512)
chr2 (174-311)||(25505480-25505615)
chr2 (169-282)||(22886011-22886124)
[»] chr8 (4 HSPs)
chr8 (156-308)||(9519052-9519205)
chr8 (161-223)||(34866640-34866702)
chr8 (169-248)||(10551752-10551832)
chr8 (161-229)||(34389590-34389658)
[»] chr7 (6 HSPs)
chr7 (161-312)||(37792747-37792899)
chr7 (161-223)||(38484991-38485053)
chr7 (125-280)||(47326396-47326551)
chr7 (154-223)||(3420242-3420311)
chr7 (169-272)||(12480298-12480402)
chr7 (161-229)||(38305676-38305744)
[»] chr3 (4 HSPs)
chr3 (197-293)||(25595121-25595217)
chr3 (159-280)||(17501759-17501880)
chr3 (169-312)||(5555991-5556136)
chr3 (172-270)||(1653452-1653550)
[»] chr6 (1 HSPs)
chr6 (161-272)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 39185051 - 39184736
Alignment:
Q  1 ctgggtgtctcacatgctttcagggttggtactgggtttggtgattttgttgctgagatcggcttcgattgggtcagttccgcaggttaatggggttggt 100  Q
    ||||||||||||| |||||||| | | |||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||||| |||||||||||    
T  39185051 ctgggtgtctcacgtgctttcacgttcggtactggttttggtgattttgttgctgagatcagcttccattcggtcagttccgcaggttcatggggttggt 39184952  T
Q  101 tgtttactccggcgacatacgttttctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgtt 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  39184951 tgtttactccggcgacatatgttttctccatgtcaccggcagctgcatttctctgatttaggttgtgattctgcttcaaactggcgtcgttgcctatgtt 39184852  T
Q  201 ttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcgttggctt 300  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39184851 ttgtagttgtgtttcgtcttcctatatatatgttttgtgttgctgtctgttttcttggtgaggcggtttggcggcgtagttttggctctatcgttggctt 39184752  T
Q  301 gtgggtatattcttcg 316  Q
    ||||||||||||||||    
T  39184751 gtgggtatattcttcg 39184736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 311
Target Start/End: Original strand, 8730292 - 8730427
Alignment:
Q  174 cttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 273  Q
    ||||| |||||||||| ||||| |||||||| |||  | ||||||||||| | ||| | |||| |||||||| |||||||| || |||| | ||||||||    
T  8730292 cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca 8730389  T
Q  274 gcgtagttttggctctatcgttggcttgtgggtatatt 311  Q
    | |||||| || |||||||||||| | |||||||||||    
T  8730390 gtgtagttctgtctctatcgttggttggtgggtatatt 8730427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 163 - 312
Target Start/End: Original strand, 42373538 - 42373686
Alignment:
Q  163 ttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgag 262  Q
    ||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||| ||| |||| | |||| ||| ||||||||||||||||    
T  42373538 ttgtgattccgcttcaaaccggtgtcgttgcccgtgttttgaagttgtgtttcgtcttcctatcgatctgttctatgttactgcctgttttcttggtgag 42373637  T
Q  263 gcggtttggcagcgtagttttggctctatcgttggcttgtgggtatattc 312  Q
    | |||||| | ||||||||||| ||||||| |||| ||||||||||||||    
T  42373638 gtggtttgacggcgtagttttgtctctatctttgg-ttgtgggtatattc 42373686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 312
Target Start/End: Original strand, 17032753 - 17033026
Alignment:
Q  47 ttgttgctgagatcggcttcgattgggtcagttccgcaggttaatggggttggtt---gtttactccggcgacatacgttttctccatgtcaccggcagc 143  Q
    ||||||||||||| ||| ||||||  |||||||  ||||||| ||||  ||||||   |||||||||| ||||  | || | |||| |||||||||| ||    
T  17032753 ttgttgctgagattggcgtcgattcagtcagttttgcaggttcatggacttggtttttgtttactccgacgacggaagtctcctccttgtcaccggcggc 17032852  T
Q  144 tgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgtttt-gtagttgtgtttcgtcttcctatagatatgtt---ttgtg 239  Q
      ||||| | ||||   ||||||||||| |||||| || || |||  | ||  |||||| || ||||  |||||||||||| |||||||||    || ||    
T  17032853 cacatttttttgatcagggttgtgattctgcttcacaccggggtcactacctgtgtttttgttgttggatttcgtcttcctctagatatgtgatattatg 17032952  T
Q  240 ttgctgtctgttttcttggtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtatattc 312  Q
    ||||||  ||||||||||||||| ||||||||||| |||| ||||| |||||||| ||  |||||||| |||||    
T  17032953 ttgctgcttgttttcttggtgagacggtttggcagtgtagtttttgtctctatcgctgatttgtgggtttattc 17033026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 314
Target Start/End: Original strand, 19597952 - 19598108
Alignment:
Q  159 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttg 257  Q
    ||||||||| |||| ||||| || ||||||||||||| |||| ||| |||| ||||| ||||||| | | | ||| |||| ||||||| ||| |||||||    
T  19597952 taggttgtgtttccacttcagaccggcgtcgttgcccgtgttctgttgttgggtttcatcttccttttggtttgtgtttgggttgctgcctg-tttcttg 19598050  T
Q  258 gtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtatattctt 314  Q
    | |||| |||||||  ||||||  |||| |||| ||| ||| ||||| ||||||||||    
T  19598051 gcgaggtggtttggaggcgtagcctttgtctctttcgatggtttgtgagtatattctt 19598108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 41919898 - 41919966
Alignment:
Q  161 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 229  Q
    ||||||| |||||||||||||  |||||||||||| |||||||| || |  |||| ||||||| |||||    
T  41919898 ggttgtggttccgcttcaaaccagcgtcgttgcccgtgttttgttgtgggatttcatcttcctctagat 41919966  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 272
Target Start/End: Original strand, 16501182 - 16501300
Alignment:
Q  155 gatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgtttt 253  Q
    ||||| |||||||||||| |||||||| ||||||| |||||||||| ||| ||||  ||| |||||||| || || ||| ||||||| || |||||||||    
T  16501182 gatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttttagtcttcctctaaatttgtgtttgtgtggccgtctgtttt 16501281  T
Q  254 cttggtgaggcggtttggc 272  Q
    |||||||||||||||||||    
T  16501282 cttggtgaggcggtttggc 16501300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 30963879 - 30963947
Alignment:
Q  161 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 229  Q
    ||||||| |||| |||||||| ||||||| ||||| |||||||| ||||  |||||||||||| |||||    
T  30963879 ggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcctctagat 30963947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 280
Target Start/End: Complemental strand, 31903036 - 31902910
Alignment:
Q  154 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttt 252  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||| |||||||| |||| ||||||||||||| ||||| | | || |||||||||| || ||    
T  31903036 tgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgttagtgttgctgtttg-tt 31902938  T
Q  253 tcttggtgaggcggtttggcagcgtagt 280  Q
    ||||| ||||||  |||||| |||||||    
T  31902937 tcttgctgaggctatttggcggcgtagt 31902910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 280
Target Start/End: Complemental strand, 39339512 - 39339357
Alignment:
Q  125 tctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta 224  Q
    ||||| |||||||||| || || ||||| |||||| ||||||| || | |||||||| | ||||| ||| | |||||||| ||||  |||| |||||||     
T  39339512 tctccttgtcaccggcggccgcctttctatgattttggttgtgttttcacttcaaaccgacgtcgctgctcgtgttttgttgttggatttcctcttcctc 39339413  T
Q  225 tagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 280  Q
    ||||| | | |||||||||||||||| |||||||||||||  ||||||| |||||||    
T  39339412 tagatctatatttgtgttgctgtctg-tttcttggtgaggatgtttggcggcgtagt 39339357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 311
Target Start/End: Complemental strand, 25505615 - 25505480
Alignment:
Q  174 cttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttttgtgttgctgtctgttttcttggtgaggcggtttggca 273  Q
    ||||| |||||||||| ||||| |||||||| |||  | ||||||||||| | ||| | |||| |||||||| |||||||| || |||| | ||||||||    
T  25505615 cttcagactggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttt-tgttgctgcctgttttcatg-tgagacagtttggca 25505518  T
Q  274 gcgtagttttggctctatcgttggcttgtgggtatatt 311  Q
    | |||||| || |||||||||||| | |||||||||||    
T  25505517 gtgtagttctgtctctatcgttggttggtgggtatatt 25505480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 22886124 - 22886011
Alignment:
Q  169 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgttt-tgtgttgctgtctgttttcttggtgaggcggt 267  Q
    |||||||||| |||||||||| |  || |||||||| |||| ||||| ||||||| | |||||||   ||||||||||  ||||| |||||||||| |||    
T  22886124 ttccgcttcagactggcgtcgctatccgtgttttgttgttgggtttcatcttcctcttgatatgtaactgtgttgctgcttgttt-cttggtgaggtggt 22886026  T
Q  268 ttggcagcgtagttt 282  Q
    ||||| |||| ||||    
T  22886025 ttggcggcgtggttt 22886011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 308
Target Start/End: Original strand, 9519052 - 9519205
Alignment:
Q  156 atttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttc 254  Q
    |||| ||||||| | |||||||||||  |||||| ||||| |||||||| |||| |||||||||| || ||||| ||| ||||| ||||||| |||||||    
T  9519052 atttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctttctctagatttgtgtttgtattgctgt-tgttttc 9519150  T
Q  255 ttggtgaggcggtttggcagcgtag-ttttggctctatcgttggcttgtgggtat 308  Q
     |||||||| || ||||| | |||| ||||| | |||||| ||| ||||||||||    
T  9519151 atggtgaggtgggttggcggtgtagtttttgtccctatcgctggtttgtgggtat 9519205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 34866702 - 34866640
Alignment:
Q  161 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 223  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||    
T  34866702 ggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttcgtcttcct 34866640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 10551752 - 10551832
Alignment:
Q  169 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtct 248  Q
    ||||||||||||  ||||||| ||||| || ||||| |||| ||||||||||||| ||||| | | |||||||||||||||    
T  10551752 ttccgcttcaaatcggcgtcgctgcccgtgctttgttgttgggtttcgtcttcctctagatctatgtttgtgttgctgtct 10551832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 34389658 - 34389590
Alignment:
Q  161 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 229  Q
    ||||||| ||||||||||||| ||||||| ||||| |||||||| || |  ||||||| |||| |||||    
T  34389658 ggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgtggaatttcgtcctcctctagat 34389590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 161 - 312
Target Start/End: Original strand, 37792747 - 37792899
Alignment:
Q  161 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttggt 259  Q
    ||||||| ||||||||||||| |||||||||| || |||||||  |||| ||||| |||| || | |||  || |||||||||||||||| |||||||||    
T  37792747 ggttgtgtttccgcttcaaaccggcgtcgttgtccgtgttttgctgttgggtttcatctttctcttgatccgtgtttgtgttgctgtctg-tttcttggt 37792845  T
Q  260 gaggcggtttggcagcgtagttt-tggctctatcgttggcttgtgggtatattc 312  Q
      |  |||||||| ||||||||| || |||| ||||||| |||||||| |||||    
T  37792846 tggctggtttggcggcgtagtttctgtctctgtcgttggtttgtgggtttattc 37792899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 223
Target Start/End: Original strand, 38484991 - 38485053
Alignment:
Q  161 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 223  Q
    ||||||| ||||||||||||| ||||||| |||||||||||||| ||   |||||||||||||    
T  38484991 ggttgtgtttccgcttcaaaccggcgtcgctgcccatgttttgttgtcaggtttcgtcttcct 38485053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 280
Target Start/End: Complemental strand, 47326551 - 47326396
Alignment:
Q  125 tctccatgtcaccggcagctgcatttctctgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta 224  Q
    ||||| |||||||||| || || ||||| |||||| ||||||| || | |||||||  || |||| ||||| |||||||| ||||  |||| |||||||     
T  47326551 tctccttgtcaccggcggccgcctttctatgatttcggttgtgttttcacttcaaatcggtgtcgctgcccgtgttttgttgttggatttcctcttcctc 47326452  T
Q  225 tagatatgt-tttgtgttgctgtctgttttcttggtgaggcggtttggcagcgtagt 280  Q
    |||||   | ||||||||||||  ||||| ||||||||||  ||||||| |||||||    
T  47326451 tagatcaatatttgtgttgctgcttgttt-cttggtgaggatgtttggcggcgtagt 47326396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 3420311 - 3420242
Alignment:
Q  154 tgatttaggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct 223  Q
    |||| ||||||||| ||||||||| ||| ||||||| ||| | |||||||| |||  |||||||||||||    
T  3420311 tgatctaggttgtggttccgcttcgaaccggcgtcgctgctcgtgttttgttgtttggtttcgtcttcct 3420242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 272
Target Start/End: Original strand, 12480298 - 12480402
Alignment:
Q  169 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttc-gtcttcctatagatatgt-tttgtgttgctgtctgttttcttggtgaggcgg 266  Q
    |||| |||||||| ||||||| ||| | |||||||| ||||  |||| |||||||| | ||| ||| ||||||| ||  |||||||||||||||||||||    
T  12480298 ttccacttcaaaccggcgtcgctgctcgtgttttgttgttggttttcagtcttcctct-gatctgtatttgtgtggccatctgttttcttggtgaggcgg 12480396  T
Q  267 tttggc 272  Q
    ||||||    
T  12480397 tttggc 12480402  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 38305676 - 38305744
Alignment:
Q  161 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagat 229  Q
    ||||||| ||||||||||||| ||||| | ||||  |||||||| ||||  |||||||||||| |||||    
T  38305676 ggttgtggttccgcttcaaaccggcgttgctgcctgtgttttgttgttggatttcgtcttcctctagat 38305744  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 25595217 - 25595121
Alignment:
Q  197 tgttttgtagttgtgtttcgtcttcctatagatatgtttt-gtgttgctgtctgttttcttggtgaggcggtttggcagcgtagttttggctctatcg 293  Q
    |||||||| ||| ||||||||| |||| ||||| |||||| |||||||||  ||||| |||||||||||||||||||| |||||||| | ||||||||    
T  25595217 tgttttgttgttatgtttcgtcatcctctagatttgtttttgtgttgctgcttgttt-cttggtgaggcggtttggcaacgtagtttcgtctctatcg 25595121  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 280
Target Start/End: Complemental strand, 17501880 - 17501759
Alignment:
Q  159 taggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatatgt-tttgtgttgctgtctgttttcttg 257  Q
    ||||||||| ||||||||||||||| |||| ||| || |||||||| |||   |||||||||||| ||||| | | |||||||||||  || |||| |||    
T  17501880 taggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcctctagatctatatttgtgttgcttcctatttt-ttg 17501782  T
Q  258 gtgaggcggtttggcagcgtagt 280  Q
    ||||||  |||||||||||||||    
T  17501781 gtgaggatgtttggcagcgtagt 17501759  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 5555991 - 5556136
Alignment:
Q  169 ttccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttccta-tagatatgt-tttgtgttgctgtctgttttcttggtgaggcgg 266  Q
    |||||||||| || ||||||| ||||| |||| | | |||| | |||||||||  | ||||||||| ||||||||||||  ||||||| ||||| |||||    
T  5555991 ttccgcttcagaccggcgtcgctgcccgtgttcttttgttgggcttcgtcttcaaaatagatatgtgtttgtgttgctgcttgttttcatggtgtggcgg 5556090  T
Q  267 tttggcagcgtagttttggctctatcgttggcttgtgggtatattc 312  Q
    || ||| || | |||||| |||| ||| ||| ||||||||||||||    
T  5556091 ttaggctgcattgttttgtctctgtcgctggtttgtgggtatattc 5556136  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 1653550 - 1653452
Alignment:
Q  172 cgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcct--atagatatgttttgtgttgctgtctgttttcttggtgaggcggttt 269  Q
    |||||||||| ||||||| ||||| |||||||| ||||  ||||||||||||  |||  |||| |||||||||||| ||| |||||| |||||| |||||    
T  1653550 cgcttcaaaccggcgtcgatgcccgtgttttgttgttggatttcgtcttcctccatatttatg-tttgtgttgctgcctg-tttcttcgtgaggaggttt 1653453  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 272
Target Start/End: Original strand, 12793553 - 12793664
Alignment:
Q  161 ggttgtgattccgcttcaaactggcgtcgttgcccatgttttgtagttgtgtttcgtcttcctatagatat-gttttgtgttgctgtctgttttcttggt 259  Q
    ||||||| || |||||||||||||||||||||||| |||||||  | ||  |||||||||||| | ||| |   |||||||||||||||| |||||||||    
T  12793553 ggttgtgttttcgcttcaaactggcgtcgttgcccgtgttttggtgatggatttcgtcttcctctggatctaaatttgtgttgctgtctg-tttcttggt 12793651  T
Q  260 gaggcggtttggc 272  Q
    ||||  |||||||    
T  12793652 gagggtgtttggc 12793664  T

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