View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21331_high_1 (Length: 229)
Name: NF21331_high_1
Description: NF21331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21331_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 73 - 217
Target Start/End: Original strand, 47674151 - 47674295
Alignment:
| Q |
73 |
ttagtcctacttgctccattccaaattagcagttgtttaagattgctatgcaaatattaagaaaaataataataaatttgctaatggacatggtagtttt |
172 |
Q |
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| T |
47674151 |
ttagtcctacttgctccattccaaattagcagttgtttaagattgctatgcaaatattaagaaaagtaataataaatttgctaatggacatggtagtttt |
47674250 |
T |
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| Q |
173 |
actaaattaaccctattcgttaataaatgcatgcttgatgctgtc |
217 |
Q |
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| T |
47674251 |
actaaattaaccctattcgttaataaatgcatgcttgatgatgtc |
47674295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 47674109 - 47674145
Alignment:
| Q |
18 |
aatgatgctggactatatttcattttatacggattat |
54 |
Q |
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| T |
47674109 |
aatgatgctggaatatagttcattttatacggattat |
47674145 |
T |
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