View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21332_high_1 (Length: 510)
Name: NF21332_high_1
Description: NF21332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21332_high_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 12 - 484
Target Start/End: Complemental strand, 17433535 - 17433061
Alignment:
| Q |
12 |
agcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17433535 |
agcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaac |
17433436 |
T |
|
| Q |
112 |
attcaggtggaactggatcaactctatacggacaggtaatttgcaatagttacatatagtataaattaaaaatcattcttaaatacttggattagatatc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17433435 |
attcaggtggaactggatcaactctatacggacaggtaatttgcaatagttacatatagtataaattaaaaatcattcttaaatacctggattagatatc |
17433336 |
T |
|
| Q |
212 |
annnnnnnattggcacaactttattaaaaagtaagtatgaaagggtctaatcaatcatgattttgcgctctc--gagtgagagttttaccaatcattatg |
309 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
17433335 |
atttttttattggcacaactttattaaaaagtaagtatgaaagggtctaatcaatcatgattttgcgctctcttgagtgagagttttaccaatcattatg |
17433236 |
T |
|
| Q |
310 |
gttctacccgacacaagatattagtttctatagttgtatacagagtatataccttgttcccaccaaaataatgattttgtgctagggttcaaacatggaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17433235 |
gttctacccgacacaagatattagtttctatagttgtacgcagagtatataccttgttcccaccaaaataatgattttgtgctagggttcaaacatggaa |
17433136 |
T |
|
| Q |
410 |
actaacacaatcattattagcatttgtttatagaaaaatgattatggctcctaaaaggacctctagatttatacc |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17433135 |
actaacacaatcattattagcatttgtttatagaaaaatgattatggctcctaaaaggacctctagatttatacc |
17433061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 484
Target Start/End: Complemental strand, 17454614 - 17454154
Alignment:
| Q |
12 |
agcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaac |
111 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17454614 |
agcacagaccatgaggagggaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactggtggctatgtgatctatgctgttgctcatcaac |
17454515 |
T |
|
| Q |
112 |
attcaggtggaactggatcaactctatacggacaggtaatttgcaatagttacatatagtataaattaaaaatcattcttaaatacttggattagatatc |
211 |
Q |
| |
|
||||||| ||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| || ||||| |
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|
| T |
17454514 |
attcagggggagttggatcaactttatatggacaggtaatttgcaatagttacatatagtataaatt-acaatcattcttaaa---------taaatatc |
17454425 |
T |
|
| Q |
212 |
annnnnnnattggcacaactttattaaaaagtaagtatgaaagggtctaatcaatcatgattttgcgctctc--gagtgagagttttaccaatcattatg |
309 |
Q |
| |
|
| | | |||| ||||||||||||| ||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
17454424 |
a-ttttttagtcgcacgactttattaaaaaataattatggaagcgtctaatcaatcatgattttgcgctctcttgagtgagagttttaccaatcattatg |
17454326 |
T |
|
| Q |
310 |
gttctacccgacacaagatattagtttctatagttgtatacagagtatataccttgttcccaccaaaataatgattttgtgctagggttcaaacatggaa |
409 |
Q |
| |
|
|||||| ||||| ||| | ||||||||||| ||||| | | |||| ||| || || ||| ||||||||||||||| || || ||| |||| | ||| |
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|
| T |
17454325 |
gttctatccgactcaaaacattagtttctacagttgcacaaagaggatacac--aatttccaacaaaataatgattttatgacagagtttaaacctagaa |
17454228 |
T |
|
| Q |
410 |
actaacacaatcattattagcatttgtttatagaaaaatgattatggctcctaaaaggacctctagatttatacc |
484 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| || ||||||| |||| |||||||||| ||| ||||||||||| |
|
|
| T |
17454227 |
actaacacaatca-tattagcatttgttcataaaagaatgattttggcccctaaaaggatctcgagatttatacc |
17454154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 32 - 158
Target Start/End: Complemental strand, 38226498 - 38226372
Alignment:
| Q |
32 |
aaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatca |
131 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
38226498 |
aaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggatca |
38226399 |
T |
|
| Q |
132 |
actctatacggacaggtaatttgcaat |
158 |
Q |
| |
|
||||||||||| |||||||||| |||| |
|
|
| T |
38226398 |
actctatacgggcaggtaatttacaat |
38226372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 38214119 - 38213986
Alignment:
| Q |
32 |
aaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatca |
131 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
38214119 |
aaatggttgtgttcatgtgatgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggatca |
38214020 |
T |
|
| Q |
132 |
actctatacggacaggtaatttgcaatagttaca |
165 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| |
|
|
| T |
38214019 |
actctatatggacaggtaatttgcaatacttaca |
38213986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 38243032 - 38242881
Alignment:
| Q |
12 |
agcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaac |
111 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||| | |
|
|
| T |
38243032 |
agcacagaccatagggaggaaaatgggtgtgttcatgtgaagaggacaagtctcccatttcaaactggtggatatgtgatctatggtgttgcacatcagc |
38242933 |
T |
|
| Q |
112 |
attcaggtggaactggatcaactctatacggacaggtaatttgcaatagtta |
163 |
Q |
| |
|
|||||||||||| |||||| || ||||| ||||||||||||| ||||||||| |
|
|
| T |
38242932 |
attcaggtggaattggatccaccctatatggacaggtaatttccaatagtta |
38242881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 38253372 - 38253236
Alignment:
| Q |
25 |
aggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaac |
124 |
Q |
| |
|
|||||| |||||| ||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
38253372 |
aggagggaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaaaccggtggctatgtgatctatggtgttgctcatcagcattcaggtggaat |
38253273 |
T |
|
| Q |
125 |
tggatcaactctatacggacaggtaatttgcaatagt |
161 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
38253272 |
tggatcaaccctatttggacaggtaatttgcaatagt |
38253236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 38220170 - 38220022
Alignment:
| Q |
19 |
accatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcagg |
118 |
Q |
| |
|
||||| |||| | |||||||||||||||||||||||||| |||||||||| | ||||||||||| ||||||||||||| |||||| ||||||||||| || |
|
|
| T |
38220170 |
accataaggatggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaactggtggttatgtgatctatggtgttgcacatcaacattcggg |
38220071 |
T |
|
| Q |
119 |
tggaactggatcaactctatacggacaggtaatttgcaatagttacata |
167 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
38220070 |
tggaatcggatccaccctatatggacaggtaatttccaatagttacata |
38220022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 38238057 - 38237919
Alignment:
| Q |
12 |
agcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaac |
111 |
Q |
| |
|
|||| ||||||| |||||| |||| |||||||||||||||||||||||||||||| | ||||||||||| ||| ||||||||| || ||||||||||| |
|
|
| T |
38238057 |
agcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatatgatctatggtgctgctcatcaac |
38237958 |
T |
|
| Q |
112 |
attcaggtggaactggatcaactctatacggacaggtaa |
150 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
38237957 |
attcaggcggaattggatcaactctatatggacaggtaa |
38237919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 38248219 - 38248165
Alignment:
| Q |
25 |
aggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactgg |
79 |
Q |
| |
|
|||||| |||||| |||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
38248219 |
aggagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
38248165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 11473504 - 11473615
Alignment:
| Q |
37 |
gttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaactct |
136 |
Q |
| |
|
||||||| |||| ||||| ||||| ||||| | |||| |||||| ||| | ||||||| |||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
11473504 |
gttgtgtcgatgtcaagagaacaagcttcccaatgcaaaatggtggttatctcatctatggagttggtcatcaacattcaggtgcaattggatcaactct |
11473603 |
T |
|
| Q |
137 |
atacggacaggt |
148 |
Q |
| |
|
||| ||| |||| |
|
|
| T |
11473604 |
atatggaaaggt |
11473615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 11485773 - 11485886
Alignment:
| Q |
35 |
tggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaact |
134 |
Q |
| |
|
|||||||||| |||| || || |||| ||||| | |||| |||||| ||||| ||||||| |||| |||||| |||||||||| || |||||||||| |
|
|
| T |
11485773 |
tggttgtgttgatgtcaaaagagcaagcttcccaatgcaaaatggtggttatgtcatctatggagttggtcatcagcattcaggtgcaattggatcaact |
11485872 |
T |
|
| Q |
135 |
ctatacggacaggt |
148 |
Q |
| |
|
||||| ||| |||| |
|
|
| T |
11485873 |
ctatatggaaaggt |
11485886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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