View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21332_high_3 (Length: 365)
Name: NF21332_high_3
Description: NF21332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21332_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 44 - 342
Target Start/End: Complemental strand, 51728188 - 51727903
Alignment:
| Q |
44 |
tttctcacctacgtgtgttaaattcaatgtactactgtcatcaattttctatatttacctcaactctactctatcattcattttggttcacagttaatcc |
143 |
Q |
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| T |
51728188 |
tttctaacctacgtgtgttaaattcaatgtactactg---tcaattttctatatttacctca-----tctctatcattcattttggttcacagttaatcc |
51728097 |
T |
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| Q |
144 |
ttccatatccattacttggacagggagtttaatttaatggttcggtttttagtaaaaaataaataaatatccaagtttaacaaatctacatcgatttgtc |
243 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51728096 |
ctccatatccattacttggacaggggg-----tttaatggttcggtttttagtaaaaaataaataaatatccaagtttaacaaatctacatcgatttgtc |
51728002 |
T |
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| Q |
244 |
tagaaatccaagcttagaggacaaatgctgttcacgagctttgtcaaaaatagtaaaaatacatatctactcgaagatacattgttcacgagctttcaa |
342 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51728001 |
tagaaatcctagcttagaggacaaatgctgttcacgagctttgtcaaaaatagtaaaaatacatatctactccaagatacattgttcacgagctttcaa |
51727903 |
T |
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