View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21332_low_2 (Length: 463)
Name: NF21332_low_2
Description: NF21332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21332_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 6503825 - 6503384
Alignment:
| Q |
18 |
aagatgttggaagaaatgttgatcggatatatgaagtggaaacggttgagaaatcggtaatcaatgattctgttgtggagaattcacaaccgccgcctct |
117 |
Q |
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| T |
6503825 |
aagatgttggaagaaatgttgatccgatgtatgaagtggaaacggttgagaaatcggtaatcaatgattctgttgtggagaattcacaaccgccgcctct |
6503726 |
T |
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| Q |
118 |
gcaaccgatacctgcgttgaggaaaaagaaaatcaggagtgcatctatggaaaacgtggcagcggtgacttctgcggaattttcctctctggtgccggaa |
217 |
Q |
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| T |
6503725 |
gcaaccgatacctgcgttgaggaagaagaaaaccaggagtgcatctatggaaaacgtggcagtagtgacttctgcggaattttcctctctggtgccggaa |
6503626 |
T |
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| Q |
218 |
ccggagctaaatccgcatcggcaaccggctgtgaggaagaagaaaattaggagtgaatctgaagtaaacacggcagcggttacttctgcagaattttctt |
317 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6503625 |
ccggagcttaatccgcatcggcaaccggctgcgaggaagaagaaaattaggagtgaatctgaagtaaacacggcagcagttacttctgcagaattttctt |
6503526 |
T |
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| Q |
318 |
cgccagtgccggaacaggagctaaatccacaactgccggtgatgaggactaaaggtgttcgaggaaatttcaagcgaacaaatcaaccgaaagcgatcga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6503525 |
cgccagtgccggaacaggagctaaatccacaactgccggtgatgaggactaaaggtgttcgaggaaatttcaagcgaacaaatcaaccgaaagcgatcga |
6503426 |
T |
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| Q |
418 |
gaaattggaagataatgattttttcgttgagaattatctacc |
459 |
Q |
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| T |
6503425 |
gaaattggaagataatgattttttcgttgagaattatctacc |
6503384 |
T |
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