View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21332_low_5 (Length: 242)
Name: NF21332_low_5
Description: NF21332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21332_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 38031359 - 38031268
Alignment:
| Q |
15 |
tctctcctcaccttcaccattttaatcaatgtttataaaaaattctagaaaaattcatcatctccatttatcaccgtcaacatcaaatccag |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38031359 |
tctctcctcaccttcaccattttaatcaatgtttataaaaaaattcaaaaaaattcatcatctccatttatcaccatcaacatcaaatccag |
38031268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 38031245 - 38031159
Alignment:
| Q |
141 |
tctagattaatttcgatatttatttttccctaaattcaaaaccctaaaaccaatattccaatttcaaattaaatcttcatctcttct |
227 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38031245 |
tctagattaaaatcgatatttatttttccccaaattcaaaaccctaaaaccaataatccaatttcaaattaaatcttcatctcttct |
38031159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 14440173 - 14440220
Alignment:
| Q |
162 |
atttttccctaaattcaaaaccctaaaaccaatattccaatttcaaatt |
210 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14440173 |
atttttccc-aaattcaaaaccctaaaaccaataatccaatttcaaatt |
14440220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 14440075 - 14440113
Alignment:
| Q |
68 |
ttcatcatctccatttatcaccgtcaacatcaaatccag |
106 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
14440075 |
ttcatcatcttcatttatcaccttcaacatcaaatccag |
14440113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University