View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21332_low_7 (Length: 225)
Name: NF21332_low_7
Description: NF21332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21332_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 38902315 - 38902508
Alignment:
| Q |
17 |
cacagaatagggttttgaaatggaaggctctccattagaaacatttttatttt-attttaaactcggtatccaacccaaggaccgactaatttgaggcca |
115 |
Q |
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| T |
38902315 |
cacagaatagggttttgaaatggaaggctctccattagaaacatttttttttttattttaaactcggtatccaacccaaggaccgactaatttgaggcca |
38902414 |
T |
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| Q |
116 |
taagtcaaagtctctccccaaaatagcagaagaatgaaatcctatgatgcacaaacatggacaccacatgacaccgaccataatatgagaaaat |
209 |
Q |
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| T |
38902415 |
taagtcaaagtctctccccaaaatagcagaagaatgaaatcctatgatgcacaaacatggacaccacatgacaccgacaataatatgagaaaat |
38902508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 38464068 - 38464022
Alignment:
| Q |
60 |
tttttattttattttaaactcggtatccaacccaaggaccgactaat |
106 |
Q |
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| T |
38464068 |
tttttattttatttttaactcggtatcctgctcaaggaccgactaat |
38464022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 6947914 - 6947877
Alignment:
| Q |
75 |
aaactcggtatccaacccaaggaccgactaatttgagg |
112 |
Q |
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| T |
6947914 |
aaactcgttatccaacccaaggaccgactaatctgagg |
6947877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 106
Target Start/End: Complemental strand, 27904596 - 27904565
Alignment:
| Q |
75 |
aaactcggtatccaacccaaggaccgactaat |
106 |
Q |
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| T |
27904596 |
aaactcggtatccaacccaaggaccgactaat |
27904565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 8024661 - 8024707
Alignment:
| Q |
65 |
attttattttaaactcggtatccaacccaaggaccgactaatttgag |
111 |
Q |
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||||| ||||||| ||| ||||||| ||||||||||||||||||||| |
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| T |
8024661 |
atttttttttaaaatcgatatccaatccaaggaccgactaatttgag |
8024707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 37351439 - 37351485
Alignment:
| Q |
60 |
tttttattttattttaaactcggtatccaacccaaggaccgactaat |
106 |
Q |
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||||| |||| ||||||||||||||||| | |||||||||||||||| |
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| T |
37351439 |
tttttttttttttttaaactcggtatccgatccaaggaccgactaat |
37351485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 40302651 - 40302684
Alignment:
| Q |
79 |
tcggtatccaacccaaggaccgactaatttgagg |
112 |
Q |
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| T |
40302651 |
tcggtatccagcccaaggaccgactaatttgagg |
40302684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 12398449 - 12398485
Alignment:
| Q |
75 |
aaactcggtatccaacccaaggaccgactaatttgag |
111 |
Q |
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||||||||||||||| ||||| ||||||||||||||| |
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| T |
12398449 |
aaactcggtatccaatccaagaaccgactaatttgag |
12398485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 22648232 - 22648181
Alignment:
| Q |
60 |
tttttattttattttaaactcggtatccaacccaaggaccgactaatttgagg |
112 |
Q |
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|||||||||| ||||||||||||||||| | |||| ||||||||||| ||||| |
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| T |
22648232 |
tttttatttt-ttttaaactcggtatccgatccaaagaccgactaatctgagg |
22648181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 12710388 - 12710336
Alignment:
| Q |
60 |
tttttattttattttaaactcggtatccaacccaaggaccgactaatttgagg |
112 |
Q |
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||||| |||| ||||||||||||||||| | ||||||||||| |||| ||||| |
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| T |
12710388 |
tttttttttttttttaaactcggtatccgatccaaggaccgattaatctgagg |
12710336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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