View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21333_high_1 (Length: 557)
Name: NF21333_high_1
Description: NF21333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21333_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 326
Target Start/End: Complemental strand, 26881565 - 26881255
Alignment:
| Q |
29 |
cagttacttgcttaagctttctagaaccatggcaatgc----------atctttctagaaccatgcctggtggtggtggaaacatgtatgaggtctcttg |
118 |
Q |
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| T |
26881565 |
cagttacttgtttaagctttctagaaccatggcaatgcacaagacaagagccttatactaccatgcccgatggtggtggaaacatgtatgaggtctcttg |
26881466 |
T |
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| Q |
119 |
catctttggcattacatagaaatttcaatgtaaaaagtaaattattgttgaaagaactctaatattacacttgtttggatactcaaggaatgtggatttg |
218 |
Q |
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| T |
26881465 |
catctttggcattacatagaaatttcaatgtaaaaagtaaattattgttgaaagaactctaatattacacttgtttggatactcaaggaatttggatttg |
26881366 |
T |
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| Q |
219 |
atctcccatggaactaatgcttatatagttttgattttgcaatttataacgttgtgtagaatgtacggg--ga-ttcttgcatcttgattagttttacaa |
315 |
Q |
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| T |
26881365 |
atctcccatggaactaatgcttatatagttttgattttgcaatttataacgttgtgtagaatgtacgggatgagttcttgcatcttgattagttttacaa |
26881266 |
T |
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| Q |
316 |
tttataaccta |
326 |
Q |
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| T |
26881265 |
tttataaccta |
26881255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 381 - 547
Target Start/End: Complemental strand, 26881250 - 26881084
Alignment:
| Q |
381 |
tgtgttcttctcttgttccctaattcccgcctggttgcttcctcgattggaacataaactcctattaaaacaacctcctccaccaaaaggagaccggctt |
480 |
Q |
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| T |
26881250 |
tgtgttcttctcttgttccgtaattcccgcctcgttgcttcctcgattagaacataaactcctattaaaacaacctcctcgaccaaaaggagaccggctt |
26881151 |
T |
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| Q |
481 |
tcaccatttctctaagcatcatggccttgggaacaacttcattttggtgagtccacattcctctctg |
547 |
Q |
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| T |
26881150 |
tcaccatttctctaagtatcatggccttgggaacaacttcattttggtgagtccacattcctctctg |
26881084 |
T |
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