View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21333_high_3 (Length: 527)
Name: NF21333_high_3
Description: NF21333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21333_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 9 - 511
Target Start/End: Complemental strand, 39021966 - 39021447
Alignment:
| Q |
9 |
gagaagaatgggaagttcgtttcgacatctaccaatcaaatgttcagtatatagagttctacaactctcaaaactattcttacaagctcatagacaacag |
108 |
Q |
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| T |
39021966 |
gagaagaatgggaagttcgtttcgacatctaccaatcaaatgttcagtatatagagttctacaactctcaaaactattcttacaagctcatagacaacag |
39021867 |
T |
|
| Q |
109 |
gtttgcagatcttactaatgaagagttcaaaagcacctatctaggttttctgcctcggtttcgtgtacaaacggaattcaggtatcataaacatggagaa |
208 |
Q |
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| T |
39021866 |
gtttgcagatattactaatgaagagttcaaaagcacctatctaggttatctgccccggtttcgtgtacaaacggaattcaggtatcataaacatggagaa |
39021767 |
T |
|
| Q |
209 |
ctaccgaaaatcatagattggagaaagaaaggtgcagttacacaagtcaaagatcaaggccgttgtggtaatttattgcaaatcaagtttctc-annnnn |
307 |
Q |
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| T |
39021766 |
ctaccgaaaagcatagattggagaaagaaaggtgcagttacacacgtcaaagatcaaggccgttgtggtaatttattgcaaatcaagtttctcttttttt |
39021667 |
T |
|
| Q |
308 |
nnnnccctcaaaaagtttattcattttctcaaatattacagtttagttactagtatgctatgatataatatacacacatctagtagttccatgcacaact |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39021666 |
ttttgcctcaaaaagtttattcattttctcaaatattacagtttagttactagtatgctatgatataatatacacacatctagtagttccatgcacaact |
39021567 |
T |
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| Q |
408 |
aaacgataagtctatacgaacttt----------------atatgaacatgacaggataaattagtctcatagttatatctatgaagaatatagttatat |
491 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
39021566 |
aaacgataagtctatacgaactttatctgaagtgtttgtgatatgaacatgacaggataaattagtcttatagttatatctataaagaatatagttatat |
39021467 |
T |
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| Q |
492 |
ctataaagaaaatagttact |
511 |
Q |
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|||||||||||||||||||| |
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| T |
39021466 |
ctataaagaaaatagttact |
39021447 |
T |
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