View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21333_low_2 (Length: 528)
Name: NF21333_low_2
Description: NF21333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21333_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 512
Target Start/End: Complemental strand, 46946650 - 46946154
Alignment:
| Q |
14 |
atattagagtgtagattatacattttaaaagcgtacaatcatttaaaaaccatccaatacgttcaattttttatatatgaaaattcataatagaatgtgt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46946650 |
atattagagtgtagattatacattttaaaagcgtacaatcattcaaaaaccatctaatacgttcaattttttatatatgaaaattcataatagaatgtgt |
46946551 |
T |
|
| Q |
114 |
gagaaggttgaagtgtgaaaatagaaagtctcataagnnnnnnnn--aaaagaaaagtttcataagatttataagtcttattatgagaattgtctgtcat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46946550 |
gagaaggttgaagtgtgaaaatagaaagtctcataagttttttttttaaaagaaaagtttcataagatttgtaagtcttattatgagaattgtctgtcat |
46946451 |
T |
|
| Q |
212 |
acgtaataatagctaatgcaacaaaattgtaaaaatcatgatttctaagaccatgagatttctagctagcttgcagctccactttcgtgagtatcgactt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46946450 |
acgtaataatagctaatgcaacaaaattgtaaaaatcatgatttctaagaccatgaaatttctagct----tgcagctccactttcgtgagtatcgactt |
46946355 |
T |
|
| Q |
312 |
tgaacatgtttatatgtggaccgtggacgcacgttttatccatcatgtatgtgtgtaattttaaacaaaccatgatcattattttcaatcgtgcnnnnnn |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46946354 |
tgaacatgtttatatgtggaccgtggacgcacgttttatccatcatgtatgtgtgtaattttaaacaaaccatgatcattattttcaatcgtgctttttt |
46946255 |
T |
|
| Q |
412 |
naaggatattttcaatcgtgcttggagcttaaaccattttcatttatgcttnnnnnnntcttctattttcattagaattcatcatcaggaaagatctaaa |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
46946254 |
taaggatattttcaatcgtgcttggagcttaaaccattttcatttatgcttaaaaaaatcttctattttcattagaattcatcgtcaggaaagatctaaa |
46946155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University