View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21333_low_4 (Length: 451)
Name: NF21333_low_4
Description: NF21333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21333_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 35632725 - 35632292
Alignment:
| Q |
1 |
aagatatgatgatgaaacagagagcaaagcaaatccaacaaacgtcaacaaaagaattaatataatataggggtggtgggcagtgtttgacttttgtata |
100 |
Q |
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| T |
35632725 |
aagatatgatgatgaaacagagagcaaagcaaatccaacaaacgtcaacaaaagaattaatataatataggggtggtgggcagtgtttgacttttgtata |
35632626 |
T |
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| Q |
101 |
ttactgacttaatgtgatgttccattccacctcccgtacggtcaaaagactcaaaacagaaaattccatcggtataaccttttgagaaggacagtcggtg |
200 |
Q |
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| T |
35632625 |
ttagtgacttaatgtgatgttccattccacctcccgtacggtcaaaagactcaaaacagaaaattccgtaggtataaccttttgagaaggacagtcggtg |
35632526 |
T |
|
| Q |
201 |
attttgcaatatttgtgttgtgccctatctttgctttgcgcgttgggttttttcttaccatgcttgctgtctttgattgctctttttggtttcatttcag |
300 |
Q |
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| T |
35632525 |
attttgcaatatttgtgttgtgccctatctttgctttgcgcgttgggttttttcttaccatgcttgctgtctttgattgctctttttggtttcatttcag |
35632426 |
T |
|
| Q |
301 |
tgttcacattagcctctgactaaactagtaattaagcagtgaccactgattctgaatagaaaatatcaccaaaagttgaaaacaagaatccatatatacc |
400 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35632425 |
tgttcacattagcctctgactaaactagtaagtaagcagtgaccactgattctgaatagaaaatatcaccaaaagttgaaaacaagaatcca--tatacc |
35632328 |
T |
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| Q |
401 |
ctacactttacagaccagttggcactatttattatt |
436 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
35632327 |
ctacactttacagaccagttggcactatttattatt |
35632292 |
T |
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