View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21333_low_6 (Length: 361)
Name: NF21333_low_6
Description: NF21333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21333_low_6 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 53526 - 53848
Alignment:
| Q |
1 |
gtgttcacttgtttattctacaagtggagttttccctctaaattgaattgaattctatataactcttgtagtggggtggtctcatctcggtttaaataga |
100 |
Q |
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| T |
53526 |
gtgttcacttgtttattctacaagtggagttttccctctaaattgaattgaattctatataactcttgtagtggg-tggtctcatctcggtttaaatgga |
53624 |
T |
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| Q |
101 |
tagagtactacttgtacttcatctattcctttaagtctagtattaattgtacatcatttttaactatgattcaacaaattttaatttgttgaatcatata |
200 |
Q |
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| T |
53625 |
tagagtactacttgtacttcatctattcctttaagtctagtattaattgtacatcatttttaactatgattcaacaaattttaatttgttgaatcatata |
53724 |
T |
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| Q |
201 |
agaaaacatgttttgtttgctgagggaatgatagaccttttttgttgagggtagctcgccaaagagattggatcaactttttgcatctctcccgactatt |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53725 |
agaaaacatgttttgtttgctgaggggatgatagaccttttttgttgagggtagctcgccaaagagattggatcaactttttgcatctctcccgactatt |
53824 |
T |
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| Q |
301 |
ttatatctctatctctctgatcat |
324 |
Q |
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|||||||||||||||||| ||||| |
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| T |
53825 |
ttatatctctatctctctaatcat |
53848 |
T |
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