View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21333_low_8 (Length: 305)
Name: NF21333_low_8
Description: NF21333
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21333_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 33618719 - 33618447
Alignment:
| Q |
16 |
atgacgcaatgatgttaaacaacttaaaaatatatttcatagggacacaaaatatattagctaacaaaaggatagataggtttagttcgcttaccaagca |
115 |
Q |
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| T |
33618719 |
atgacgcaatgatgttaaacaacttaaaaatatatttcatagggacacaaaatatattaactaacaaaaagatagataggtttagttcgcttaccaagca |
33618620 |
T |
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| Q |
116 |
gacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaaaggctaacagatcca |
215 |
Q |
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| T |
33618619 |
gacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaaaggctaacagatcca |
33618520 |
T |
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| Q |
216 |
agtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaagg |
288 |
Q |
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| T |
33618519 |
agtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaagg |
33618447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 101 - 283
Target Start/End: Complemental strand, 33609459 - 33609277
Alignment:
| Q |
101 |
ttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaa |
200 |
Q |
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| T |
33609459 |
ttcgcttaccaagcagacaaacatcataatacccccagttatgaacaggaatcttcgaccaaatcgatcaacaataccggcagagataacgttagacaca |
33609360 |
T |
|
| Q |
201 |
aggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaata |
283 |
Q |
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| T |
33609359 |
aggctaacggatccaagtacaatggcggaaattaaagcgccgtcacgtcccaagcccacagaatggaagaggttaggtgaata |
33609277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 33627851 - 33627779
Alignment:
| Q |
99 |
agttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaa |
171 |
Q |
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| T |
33627851 |
agttcacttaccaagcagacaaacatgataatacccccagtaatgaacaagaatcttcgaccaaatcgatcaa |
33627779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 33588632 - 33588561
Alignment:
| Q |
212 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaata |
283 |
Q |
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| T |
33588632 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaata |
33588561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 33595804 - 33595733
Alignment:
| Q |
212 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaata |
283 |
Q |
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|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| |
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| T |
33595804 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaata |
33595733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 33602935 - 33602864
Alignment:
| Q |
212 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaata |
283 |
Q |
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|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| |
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| T |
33602935 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaata |
33602864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 33622824 - 33622758
Alignment:
| Q |
105 |
cttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaa |
171 |
Q |
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| T |
33622824 |
cttacaaagcagacaaacatcataacacccccggttatgaacaagaatcttcgaccaaatctatcaa |
33622758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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