View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21334_high_2 (Length: 614)
Name: NF21334_high_2
Description: NF21334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21334_high_2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 87 - 614
Target Start/End: Original strand, 41653999 - 41654504
Alignment:
| Q |
87 |
caacagaatgagtacaaaagaataatatcacctctgaaatatcagacaagatgtgttgctgcttttccagatcaacaaggttttttggtatgtattcact |
186 |
Q |
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| T |
41653999 |
caacagaatgagtacaaaagaataatatcacctctgaaatatcagacaagatgtgtcgctgcttttcctgatcaacaaggttttttggtatgtattcact |
41654098 |
T |
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| Q |
187 |
cctcacttacattcaaatacagttttgttttattt-atttaattccatcactgtactgatgtgggtcaattctacacttggattggagcttgtatgtgga |
285 |
Q |
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| T |
41654099 |
cctcacttacattcaaatacagttttgttttattttatttaattccatcactgtactgatgtgggtcaattctacacttggattggagcttgtatgtgaa |
41654198 |
T |
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| Q |
286 |
gactctaattagctcattgtagtgcagtatttagacaattgggttatcaatgcattatttgctagaagacttttgcactgatactattaaatgatgacat |
385 |
Q |
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| T |
41654199 |
gactctaattagctcattgtagtgcagtatttagagaattgggttatcaatgcattatttgctagaagacttttgcactgatactattaaatgatgacat |
41654298 |
T |
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| Q |
386 |
tatttgtcgagttagaaacatacaggagtgaaacttgaattttatgttcacattatcctttgctgtatttgttttgtacattacaaactcaaactcaaac |
485 |
Q |
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| T |
41654299 |
tatttgtcgagttagagccatacaggagtgaaacttgaa--------------tatcctttgctgtatttgttttgtacattacaaactcaaactcaaac |
41654384 |
T |
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| Q |
486 |
tcaaacaccgtcattttaatttaaacagtttcgtgtattgctt-----ttatgccattaaaatcttcttgacgtactattgttttatctgtaggtcggct |
580 |
Q |
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| T |
41654385 |
tcaaacaccgtcattttaatttaaacagtttcgtgtgttgcttttatattatgccattaaaa--------------tattgttttttctgtaggtcggct |
41654470 |
T |
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| Q |
581 |
caatagaaggaagggttggagtacaccatcttga |
614 |
Q |
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| T |
41654471 |
caatagaaggaagggttggagtacaccatcttga |
41654504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 87 - 210
Target Start/End: Complemental strand, 28816819 - 28816696
Alignment:
| Q |
87 |
caacagaatgagtacaaaagaataatatcacctctgaaatatcagacaagatgtgttgctgcttttccagatcaacaaggttttttggtatgtattcact |
186 |
Q |
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||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
28816819 |
caacagactgagtacaaaaggatagtatcacccctgaaatatcagacaagatgtgttgctgcttttccagatcagcaaggttttttggtatgtactcact |
28816720 |
T |
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| Q |
187 |
cctcacttacattcaaatacagtt |
210 |
Q |
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| T |
28816719 |
cctcacttgcattcagatacagtt |
28816696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 614
Target Start/End: Complemental strand, 28816200 - 28816154
Alignment:
| Q |
568 |
ctgtaggtcggctcaatagaaggaagggttggagtacaccatcttga |
614 |
Q |
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| T |
28816200 |
ctgtaggttggctcaatagagggaagggttggagtacatcaccttga |
28816154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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