View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21334_high_3 (Length: 505)
Name: NF21334_high_3
Description: NF21334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21334_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 210 - 472
Target Start/End: Original strand, 31118790 - 31119051
Alignment:
| Q |
210 |
cagattgtgtattagttttagaaatatgtcatagatattgtttctaagttcttctaacttttgacctagctactggtatttcatcttaaactaactgttc |
309 |
Q |
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| T |
31118790 |
cagattgtgtattagttttggaaatatgtcatagatattgtttctaagttcttctaacttt-gacctagctactggtatttcatcttaaactaactgttc |
31118888 |
T |
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| Q |
310 |
tacaccataaaaccattgtagatgatctatgtccctatttagggagggacacttcccatagctatggggtagtcatggcaaccccaaaacaattaaaata |
409 |
Q |
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| T |
31118889 |
tacaccataaaaccattgtagatgatctatgtccctatttagggagggacacttcccatagctatggggtagtcatggcaaccccaaaacaattaaaata |
31118988 |
T |
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| Q |
410 |
gtataaaccatatatacgtatatacaagttgtaagttaattatttaacttacttttaaaatgt |
472 |
Q |
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| T |
31118989 |
gtataaaccatatatacgtatatacaagttgtaagttaattatttaacttactcttaaaatgt |
31119051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 31118598 - 31118761
Alignment:
| Q |
19 |
tttttggtcctaaggatccatccaccacttcatcttcttccaacagcatctttagctccatttttccacctccatccactgtatgcatgatttcctctcc |
118 |
Q |
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| T |
31118598 |
tttttggtcctaaggatccatccaccacttcatcttcttccaacagcatctttagctccatttttccacctccatccactgtatgcatgatttcctctcc |
31118697 |
T |
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| Q |
119 |
cttatat-aannnnnnnncatgcatggatatattttgctcatttatgcatgtcccttcaagact |
181 |
Q |
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| T |
31118698 |
cttatataaattttttttcatgcatggatatattttgctcatttatgcatgtcccttcaagact |
31118761 |
T |
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