View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21334_low_1 (Length: 676)
Name: NF21334_low_1
Description: NF21334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21334_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 609; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Original strand, 14672185 - 14672841
Alignment:
| Q |
1 |
aaaatacatgaagttcggatctacaatgaagtgccaacttaaatcggatcgctgtgactgtgatgcaactttgaaggttctggctgtagcataaaccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14672185 |
aaaatacatgaagttcggatctacaatgaagtgccaacttaaatcggatcgctgtgactgtgatgcaattttgaaggttctggctgtagcataaaccaat |
14672284 |
T |
|
| Q |
101 |
ggtggagcaacaatagagtactttattgtagcagggttagtagaaacaacaagatcagaactagtggagctgtttatggggtggtagaagtaatatccgt |
200 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14672285 |
ggtggaccaaaaatagagtactttattgtagcagggttagtagaaacaacaagatcagaactagtggagctgtttatggggtggtagaagtaatatccgt |
14672384 |
T |
|
| Q |
201 |
cattctcccaagtccttccaaggttgtcactcaaagatgcaccaccaatactgactctgtacaccgtttcaacgatagattttgagaaatgttcaaaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14672385 |
cattctcccaagtccttccaaggttgtcactcaaagatgcaccaccaatactgactctggacaccgtttcaacgatagattttgagaaatgttcaaaaaa |
14672484 |
T |
|
| Q |
301 |
gcctgatggatttagagttactactatttggtcagggaagaggtcatctggtatagagataacttcgatggcattaataaagccgagtgaattgttttga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14672485 |
gcctgatggatttagagttactactatttggtcagggaagaggtcatctggtatagagataacttcgatggcattaataaagccgagtgaattgttttga |
14672584 |
T |
|
| Q |
401 |
gggacgaaagtaagtgataacttgtctgatgtaatgttgattgaatactccttcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
14672585 |
gggacgaaagtaagtgataacttgtctgatgtaatgttgattgactactccttcatcaaatgagagctattatagttcgtgaaattgaaattattgagaa |
14672684 |
T |
|
| Q |
501 |
gcacaatactatcagcggttactgttattgtggcgaaggtcgtgttagggttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttg |
600 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
14672685 |
gcacgatactatcagcggttactgttattgtggcaaaggtcgtgttagggttggaatcaggaagagggtgaaaatagagacggatccaatgtctcccttg |
14672784 |
T |
|
| Q |
601 |
ttgttgaatattgaatgtatatgatgccgtttcaaagaagagtcgagctgagttata |
657 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
14672785 |
ttgttgaattttgaatgtatatgatgacgtttcaaagaagagtcgagctgagttata |
14672841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Original strand, 14677563 - 14678219
Alignment:
| Q |
1 |
aaaatacatgaagttcggatctacaatgaagtgccaacttaaatcggatcgctgtgactgtgatgcaactttgaaggttctggctgtagcataaaccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
14677563 |
aaaatacatgaagttcggatctacaatgaagtgccaacttaaatcggatcgctgtgactgtgatgcaattttgaaggttctggctgtagcataaaccaat |
14677662 |
T |
|
| Q |
101 |
ggtggagcaacaatagagtactttattgtagcagggttagtagaaacaacaagatcagaactagtggagctgtttatggggtggtagaagtaatatccgt |
200 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14677663 |
ggtggaccaaaaatagagtactttattgtagcagggttagtagaaacaacaagatcagaactagtggagctgtttatggggtggtagaagtaatatccgt |
14677762 |
T |
|
| Q |
201 |
cattctcccaagtccttccaaggttgtcactcaaagatgcaccaccaatactgactctgtacaccgtttcaacgatagattttgagaaatgttcaaaaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14677763 |
cattctcccaagtccttccaaggttgtcactcaaagatgcaccaccaatactgactctggacaccgtttcaacgatagattttgagaaatgttcaaaaaa |
14677862 |
T |
|
| Q |
301 |
gcctgatggatttagagttactactatttggtcagggaagaggtcatctggtatagagataacttcgatggcattaataaagccgagtgaattgttttga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14677863 |
gcctgatggatttagagttactactatttggtcagggaagaggtcatctggtatagagataacttcgatggcattaataaagccgagtgaattgttttga |
14677962 |
T |
|
| Q |
401 |
gggacgaaagtaagtgataacttgtctgatgtaatgttgattgaatactccttcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
14677963 |
gggacgaaagtaagtgataacttgtctgatgtaatgttgattgactactccttcatcaaatgagagctattatagttcgtgaaattgaaattattgagaa |
14678062 |
T |
|
| Q |
501 |
gcacaatactatcagcggttactgttattgtggcgaaggtcgtgttagggttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttg |
600 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14678063 |
gcacgatactatcagcggttactgttattgtggcaaaggtcgtgttagggttggaatcaggaagagggtgaaaatagagacggatccaatgtctcccttg |
14678162 |
T |
|
| Q |
601 |
ttgttgaatattgaatgtatatgatgccgtttcaaagaagagtcgagctgagttata |
657 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14678163 |
ttgttgaattttgaatgtatatgatgacgtttcaaagaagagtcgagctgagttata |
14678219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 454 - 647
Target Start/End: Complemental strand, 14666309 - 14666109
Alignment:
| Q |
454 |
catcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcg----gttactgttattgtggcgaaggtcgtgttagg |
549 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||| |||||||||||| || | |||||||||| ||||||||||||| || | |||| |||| || |
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|
| T |
14666309 |
catcaaaagagagctaatatagttcatgaaagtgatgttattgagaagtacgaaactatcagcgattacttactgttattgtagcaatggtcatgttggg |
14666210 |
T |
|
| Q |
550 |
gttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtat---atgatgccgtttcaaagaagagtcga |
646 |
Q |
| |
|
| ||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14666209 |
ggtggaaccgggaaaaagatgaaaatagagacggatccaatgtctcccttgttgttgaattttgaatgtatacgatgatgccgtttcaaagaagagtcga |
14666110 |
T |
|
| Q |
647 |
g |
647 |
Q |
| |
|
| |
|
|
| T |
14666109 |
g |
14666109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 436 - 653
Target Start/End: Original strand, 14687333 - 14687557
Alignment:
| Q |
436 |
gttgattgaatactccttcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcg----gttactgttattgt |
531 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| | |||||||||| |||||| |||||| |
|
|
| T |
14687333 |
gttggttgcatactccttcatcaaatgagagctgatatagttcatgaaagtgatgttattgagaagcacgaaactatcagcgatatattactgctattgt |
14687432 |
T |
|
| Q |
532 |
ggcgaaggtcgtgttagggttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtat---atgatgcc |
628 |
Q |
| |
|
||| | |||| |||| ||| |||||||| ||||| | |||||||||||||| ||||||| |||| ||||||||||||| |||||||| |||||||| |
|
|
| T |
14687433 |
ggcaatggtcatgttggggctggaatcaagaaaaagttgaaaatagagacgaatccaatatctctcttgttgttgaattaagaatgtatatgatgatgcc |
14687532 |
T |
|
| Q |
629 |
gtttcaaagaagagtcgagctgagt |
653 |
Q |
| |
|
|||||||||||||||| || ||||| |
|
|
| T |
14687533 |
gtttcaaagaagagtcaagatgagt |
14687557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 437 - 647
Target Start/End: Original strand, 30734834 - 30735051
Alignment:
| Q |
437 |
ttgattgaatactccttcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcg----gttactgttattgtg |
532 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| |||||||| ||||||||| ||||||||||||||| | |||||||||| ||||||||||||| |
|
|
| T |
30734834 |
ttgattgcatactccttcatcaaaagagagctaatatagttcatgaaagtgatgttattgagaagcacgaaactatcagcgattacttactgttattgta |
30734933 |
T |
|
| Q |
533 |
gcgaaggtcgtgttagggttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtat---atgatgccg |
629 |
Q |
| |
|
|| | |||| |||| ||||||||| | |||||| | ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | |
|
|
| T |
30734934 |
gcaatggtcatgttggggttggaaccgggaaaaagctgaaattagagacggatccaatgtctcccttgttgttgaattttgaatgtatacgatgatgcag |
30735033 |
T |
|
| Q |
630 |
tttcaaagaagagtcgag |
647 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
30735034 |
tttcaaagaagagtcgag |
30735051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 445 - 657
Target Start/End: Complemental strand, 24057495 - 24057283
Alignment:
| Q |
445 |
atactccttcatcaaatgagagctattatagttcgtgaaagtgaagttattgagaagcacaatactatcagcggttactgttattgtggcgaaggtcgtg |
544 |
Q |
| |
|
||||||||||||||| |||||| || ||||||| ||||||||||||| ||||||||| || |||| | |||| |||||| ||| |||||| || |
|
|
| T |
24057495 |
atactccttcatcaagtgagagttactatagtttacaaaagtgaagttatcaagaagcacataaccatcaatgattaccgttattaaggcaaaggtcatg |
24057396 |
T |
|
| Q |
545 |
ttagggttggaatcaggaaaagggtgaaaatagagacggatccaatgtctcccttgttgttgaatattgaatgtatatgatgccgtttcaaagaagagtc |
644 |
Q |
| |
|
|| |||||||||| || ||||||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||| |||||| |||||||||||| || |
|
|
| T |
24057395 |
ttgtggttggaatcgggtaaagggtgaaaatggagacggatccagtgtctcccatgttgttgaattttgaatgtataggatgccttttcaaagaagattc |
24057296 |
T |
|
| Q |
645 |
gagctgagttata |
657 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24057295 |
gagctgagttata |
24057283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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