View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21334_low_4 (Length: 380)
Name: NF21334_low_4
Description: NF21334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21334_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 37590189 - 37589984
Alignment:
| Q |
4 |
ataatacttcaactctgatttttacaaaataaaaagattgaatgcccattttagaaaattcgataaaactccctccggtcgttttt-acagatgaacnnn |
102 |
Q |
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| T |
37590189 |
ataatacttcaactctgatttttacaaaataaaaagattgaatgcccattttagaaaattcgataatactccctccgctcgttttttacagatgaaaaaa |
37590090 |
T |
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| Q |
103 |
nnnnnnnnn-cataaataagaccaagaaacaagttgaaaatacaatagtatatgtttcattttaatattgttttatataaataactgttattttgaaata |
201 |
Q |
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| T |
37590089 |
aataaaaaaacataaataagaccaagaaacaagttgaaaatacaata---tatgtttcattttaatatttttttatataaataactgttattttgaaata |
37589993 |
T |
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| Q |
202 |
tcaatataa |
210 |
Q |
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||||||||| |
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| T |
37589992 |
tcaatataa |
37589984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 195 - 359
Target Start/End: Complemental strand, 37589423 - 37589259
Alignment:
| Q |
195 |
tgaaatatcaatataaaattaaaacattaattaattttggtgactgtcacgcccaaaatgttttccgaaaaatttattggttaaaatcattannnnnnnn |
294 |
Q |
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||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37589423 |
tgaaaaataaataaaaaattaaaacattaattaattttggtgactgtcacgcccaaaatgtttcccgaaaaatttattggttaaaatcattatttttttt |
37589324 |
T |
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| Q |
295 |
acagggttaaaatcatttgttataaactagaataagctataactttgagaggaagtgtgaagaat |
359 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37589323 |
acaaggttaaaatcatttgttataaactagaataagctataactttgagaggaagtgtgaagaat |
37589259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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