View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21334_low_5 (Length: 326)
Name: NF21334_low_5
Description: NF21334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21334_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 41654815 - 41654480
Alignment:
| Q |
1 |
agcaaaggtgaaaagaagacatcgataagaaaagcatataatgaaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatcc |
100 |
Q |
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| T |
41654815 |
agcaaaggtgaaaagaagacatcgataagaaaagcatataatgaaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatcc |
41654716 |
T |
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| Q |
101 |
agcagttgcaaaagtgtgatgtacctgaagacaaagac---atcgataagatcttctagaaaagaatattgaatccacaactttccaaat--aatgttga |
195 |
Q |
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| T |
41654715 |
agcagttgcaaaagtgtgatgtacctgaagacaaagacatgatcgataagatcttctagaaaagaatattgaatccacaactttccaaataaaaaattta |
41654616 |
T |
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| Q |
196 |
tattataaa-----gtgtattacaggatgaaaatttaaggagttgactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttgtctt |
290 |
Q |
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| T |
41654615 |
actaattaatgttgatattttacaggatgaaaatttaacgagttgactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttgtctt |
41654516 |
T |
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| Q |
291 |
gtaatgcatcatcaagatggtgtactccaacccttc |
326 |
Q |
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| T |
41654515 |
gtaatgcatcatcaagatggtgtactccaacccttc |
41654480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 28815873 - 28815982
Alignment:
| Q |
43 |
gaaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatccagcagttgcaaaagtgtgatgtacctgaagacaaagacatcg |
142 |
Q |
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| T |
28815873 |
gaaccttgagtctctgtttactgtccttatcccagaaattaaaagcaccgtcagatccagcagttgcaaaagtgtgatgtacctgaaatcaaagaaatca |
28815972 |
T |
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| Q |
143 |
ataagatctt |
152 |
Q |
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| T |
28815973 |
ataagatctt |
28815982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 187 - 326
Target Start/End: Original strand, 28816039 - 28816178
Alignment:
| Q |
187 |
taatgttgatattataaagtgtattacaggatgaaaatttaaggagttgactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttg |
286 |
Q |
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| T |
28816039 |
taattttgatattatacagtgcattaccggatggaaatttaaggagttgaccgaatatatctcgttactttctctgtggcatttaaaagtaaaattcttg |
28816138 |
T |
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| Q |
287 |
tcttgtaatgcatcatcaagatggtgtactccaacccttc |
326 |
Q |
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| T |
28816139 |
ctttgttgtgcatcatcaaggtgatgtactccaacccttc |
28816178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 1460483 - 1460565
Alignment:
| Q |
44 |
aaccttgagtctctgtttactgttcttatcccagaaatgaaaagcaccatcagatccagcagttgcaaaagtgtgatgtacct |
126 |
Q |
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| T |
1460483 |
aaccttaagcctctgtttactatccttgtcccaaaaattaaaagcaccatcagaaccagccgtagcaaatgtgtggtgtacct |
1460565 |
T |
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